Evidence map›Paper›PMID 34880865›Full record

ArticleFrontiers in immunology2021

N6-Methyladenosine Methylation Analysis of Long Noncoding RNAs and mRNAs in IPEC-J2 Cells Treated With

Jiaojiao Yang, Qiaoli Yang, Juanli Zhang, Xiaoli Gao, Ruirui Luo, Kaihui Xie, Wei Wang, Jie Li, Xiaoyu Huang, Zunqiang Yan and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. METTL3-Mediated LncRNAInternational journal of molecular sciences · 2023
    Article
  6. Comprehensive Analysis Revealed the Potential Roles of NInternational journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Jiaojiao YangCollege of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Qiaoli YangCollege of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Juanli ZhangCollege of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Xiaoli GaoCollege of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Ruirui LuoCollege of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Kaihui XieCollege of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Wei WangCollege of Animal Science and Technology, Northwest A&F University, Xian, China.
Jie LiCollege of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Xiaoyu HuangCollege of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Zunqiang YanCollege of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Pengfei WangCollege of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Shuangbao GunCollege of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.
Gansu Agricultural University · CNNorthwest A&F University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: The n6-methyladenosine (m6A) modification is present widely in mRNAs and long non-coding RNAs (lncRNAs), and is related to the occurrence and development of certain diseases. However, the role of m6A methylation in Methods: Here, we treated intestinal porcine jejunum epithelial cells (IPEC-J2 cells) with Results: We identified 6,413 peaks, representing 5,825 m6A-modified mRNAs and 433 modified lncRNAs, of which 4,356 m6A modified mRNAs and 221 m6A modified lncRNAs were significantly differential expressed between the control group and CPB2 group. The motif GGACU was enriched significantly in both the control group and the CPB2 group. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation analysis showed that the differentially methylated modified mRNAs were mainly enriched in Hippo signaling pathway and Wnt signaling pathway. In addition, the target genes of the differentially m6A modified lncRNAs were related to defense response to virus and immune response. For example, Conclusion: In summary, this study established the m6A transcription profile of mRNAs and lncRNAs in IPEC-J2 cells treated by CPB2 toxin. Further analysis showed that m6A-modified RNAs were related to defense against viruses and immune response after CPB2 toxin treatment of the cells. Threem6A-modified lncRNAs,

Indexed as

AdenosineAnimalsBacterial ToxinsCell LineClostridium InfectionsClostridium perfringensEpithelial CellsGene Expression RegulationGene OntologyIntestinal MucosaMethylationReverse Transcriptase Polymerase Chain ReactionRNA, Long NoncodingRNA, MessengerRNA-SeqSignal TransductionAdenosineBacterial Toxinscpb2 protein, Clostridium perfringensN-methyladenosineRNA, Long NoncodingRNA, MessengerCPB2IPEC-J2M6A methylationMeRIP-seqRNA-seq

Identifiers

PMID34880865
PMCPMC8646102
OpenAlexW3215802976

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.