Evidence map›Paper›PMID 34880292›Full record

ArticleScientific reports2021

Genetic and immunologic features of recurrent stage I lung adenocarcinoma.

Johannes R Kratz, Jack Z Li, Jessica Tsui, Jen C Lee, Vivianne W Ding, Arjun A Rao, Michael J Mann, Vincent Chan, Alexis J Combes, Matthew F Krummel and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. GATA1 activates HSD17B6 to improve efficiency of cisplatin in lung adenocarcinoma via DNA damage.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2024
    Article
  8. Observational
  9. Review
  10. Article
  11. Frontiers in immunology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Johannes R KratzDepartment of Surgery, Division of Cardiothoracic Surgery, University of California San Francisco, 500 Parnassus Ave, MUW-405, San Francisco, CA, 94143, USA. johannes.kratz@ucsf.edu.
Jack Z LiDepartment of Surgery, Division of Cardiothoracic Surgery, University of California San Francisco, 500 Parnassus Ave, MUW-405, San Francisco, CA, 94143, USA.
Jessica TsuiImmunoX Initiative, University of California San Francisco, San Francisco, CA, 94143, USA.
Jen C LeeDepartment of Surgery, Division of Cardiothoracic Surgery, University of California San Francisco, 500 Parnassus Ave, MUW-405, San Francisco, CA, 94143, USA.
Vivianne W DingDepartment of Surgery, Division of Cardiothoracic Surgery, University of California San Francisco, 500 Parnassus Ave, MUW-405, San Francisco, CA, 94143, USA.
Arjun A RaoImmunoX Initiative, University of California San Francisco, San Francisco, CA, 94143, USA.
Michael J MannDepartment of Surgery, Division of Cardiothoracic Surgery, University of California San Francisco, 500 Parnassus Ave, MUW-405, San Francisco, CA, 94143, USA.
Vincent ChanImmunoX Initiative, University of California San Francisco, San Francisco, CA, 94143, USA.
Alexis J CombesImmunoX Initiative, University of California San Francisco, San Francisco, CA, 94143, USA.
Matthew F KrummelImmunoX Initiative, University of California San Francisco, San Francisco, CA, 94143, USA.
David M JablonsDepartment of Surgery, Division of Cardiothoracic Surgery, University of California San Francisco, 500 Parnassus Ave, MUW-405, San Francisco, CA, 94143, USA.
University of California, San Francisco · USUCSF Helen Diller Family Comprehensive Cancer Center · USUniversity of San Francisco · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although surgery for early-stage lung cancer offers the best chance of cure, recurrence still occurs between 30 and 50% of the time. Why patients frequently recur after complete resection of early-stage lung cancer remains unclear. Using a large cohort of stage I lung adenocarcinoma patients, distinct genetic, genomic, epigenetic, and immunologic profiles of recurrent tumors were analyzed using a novel recurrence classifier. To characterize the tumor immune microenvironment of recurrent stage I tumors, unique tumor-infiltrating immune population markers were identified using single cell RNA-seq on a separate cohort of patients undergoing stage I lung adenocarcinoma resection and applied to a large study cohort using digital cytometry. Recurrent stage I lung adenocarcinomas demonstrated higher mutation and lower methylation burden than non-recurrent tumors, as well as widespread activation of known cancer and cell cycle pathways. Simultaneously, recurrent tumors displayed downregulation of immune response pathways including antigen presentation and Th1/Th2 activation. Recurrent tumors were depleted in adaptive immune populations, and depletion of adaptive immune populations and low cytolytic activity were prognostic of stage I recurrence. Genomic instability and impaired adaptive immune responses are key features of stage I lung adenocarcinoma immunosurveillance escape and recurrence after surgery.

Indexed as

Biomarkers, TumorAdenocarcinoma of LungComputational BiologyDisease SusceptibilityEpigenesis, GeneticGene Expression ProfilingGene Expression Regulation, NeoplasticGenetic VariationHumansMaleMutationNeoplasm Recurrence, LocalNeoplasm StagingPrognosisProportional Hazards ModelsTumor MicroenvironmentBiomarkers, Tumor

Identifiers

PMID34880292
PMCPMC8654957
OpenAlexW4200156317

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.