Evidence map›Paper›PMID 34880286›Full record

ArticleScientific reports2021

Quantitative proteomic screen identifies annexin A2 as a host target for Salmonella pathogenicity island-2 effectors SopD2 and PipB2.

Katelyn Knuff-Janzen, Antonio Serapio-Palacios, James McCoy, Zakhar Krekhno, Kyung-Mee Moon, Wanyin Deng, Leonard J Foster, B Brett Finlay

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. The interplay betweenCell insight · 2025
    Review
  5. Functional Divergence of the ParalogInternational journal of molecular sciences · 2024
    Review
  6. mBio · 2023
    Article
  7. Speaking the host language: howMicrobiology (Reading, England) · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Katelyn Knuff-JanzenMichael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
Antonio Serapio-PalaciosMichael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
James McCoyMichael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
Zakhar KrekhnoMichael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
Kyung-Mee MoonMichael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
Wanyin DengMichael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
Leonard J FosterMichael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
B Brett FinlayMichael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada. bfinlay@msl.ubc.ca.
University of British Columbia · CACanada's Michael Smith Genome Sciences Centre · CA

Funding

CIHR FDN-159935
6 · The paper itself

Abstract

Intracellular pathogens need to establish an intracellular replicative niche to promote survival and replication within the hostile environment inside the host cell. Salmonella enterica serovar Typhimurium (S. Typhimurium) initiates formation of the unique Salmonella-containing vacuole and an extensive network of Salmonella-induced tubules in order to survive and thrive within host cells. At least six effectors secreted by the type III secretion system encoded within Salmonella pathogenicity island-2 (SPI-2), namely SifA, SopD2, PipB2, SteA, SseJ, and SseF, purportedly manipulate host cell intracellular trafficking and establish the intracellular replicative niche for S. Typhimurium. The phenotypes of these effectors are both subtle and complex, complicating elucidation of the mechanism underpinning host cell manipulation by S. Typhimurium. In this work we used stable isotope labeling of amino acids in cell culture (SILAC) and a S. Typhimurium mutant that secretes increased amounts of effectors to identify cognate effector binding partners during infection. Using this method, we identified the host protein annexin A2 (AnxA2) as a binding partner for both SopD2 and PipB2 and were able to confirm its binding to SopD2 and PipB2 by reciprocal pull down, although there was a low level of non-specific binding of SopD2-2HA and PipB2-2HA to the Ni-Sepharose beads present. We further showed that knockdown of AnxA2 altered the intracellular positioning of the Salmonella containing vacuole (SCV). This suggests that AnxA2 plays a role in the subcellular positioning of the SCV which could potentially be mediated through protein-protein interactions with either SopD2 or PipB2. This demonstrates the value of studying effector interactions using proteomic techniques and natural effector delivery during infection rather than transfection.

Indexed as

Annexin A2Bacterial ProteinsElectrophoresis, Polyacrylamide GelGene Knockdown TechniquesHeLa CellsHumansIsotope LabelingMass SpectrometryProteomicsSalmonella typhimuriumAnnexin A2ANXA2 protein, humanBacterial ProteinsPipB2 protein, Salmonella enterica

Identifiers

PMID34880286
PMCPMC8655068
OpenAlexW4200221118

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.