Evidence map›Paper›PMID 34878971›Full record

ArticleMicrobial genomics2021

The global population structure and evolutionary history of the acquisition of major virulence factor-encoding genetic elements in Shiga toxin-producing

Ruriko Nishida, Keiji Nakamura, Itsuki Taniguchi, Kazunori Murase, Tadasuke Ooka, Yoshitoshi Ogura, Yasuhiro Gotoh, Takehiko Itoh, Atsushi Toyoda, Jacques Georges Mainil and 22 more

Abstract read
In one paragraph

Article in Microbial genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Diversity of Shiga toxin transducing phages inFrontiers in microbiology · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Shiga toxin-producingAccess microbiology · 2023
    Article
  11. Article
  12. Article
  13. Viruses in astrobiology.Frontiers in microbiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors.

Ruriko NishidaGraduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Keiji NakamuraGraduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Itsuki TaniguchiGraduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Kazunori MuraseGraduate School of Medicine, Kyoto University, Kyoto, Japan.
Tadasuke OokaGraduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan.
Yoshitoshi OguraKurume University School of Medicine, Fukuoka, Japan.
Yasuhiro GotohGraduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Takehiko ItohGraduate School of Bioscience of Biotechnology, Tokyo Institute of Technology, Tokyo, Japan.
Atsushi ToyodaAdvanced Genomics Center, National Institute of Genetics, Shizuoka, Japan.
Jacques Georges MainilFaculty of Veterinary Medicine, University of Liege, Liege, Belgium.
Denis PiérardUniversitair Ziekenhuis Brussel (UZ Brussel), Vrije Universiteit Brussel (VUB), Brussels, Belgium.
Kazuko SetoOsaka Institute of Public Health, Osaka, Japan.
Tetsuya HaradaOsaka Institute of Public Health, Osaka, Japan.
Junko IsobeToyama Institute of Health, Toyama, Japan.
Keiko KimataToyama Institute of Health, Toyama, Japan.
Yoshiki EtohFukuoka Institute of Health and Environmental Sciences, Fukuoka, Japan.
Mitsuhiro HamasakiFukuoka Institute of Health and Environmental Sciences, Fukuoka, Japan.
Hiroshi NarimatsuOita Prefectural Institute of Health and Environment, Oita, Japan.
Jun YatsuyanagiAkita Prefectural Institute of Public Health, Akita, Japan.
Mitsuhiro KameyamaYamaguchi Prefectural Institute of Public Health and Environment, Yamaguchi, Japan.
Yuko MatsumotoYokohama City Institute of Public Health, Kanagawa, Japan.
Yuhki NagaiMie Prefectural Institute of Public Health and Environmental Sciences, Mie, Japan.
Jun KawaseShimane Prefectural Institute of Public Health and Environmental Science, Shimane, Japan.
Eiji YokoyamaChiba Prefectural Institute of Public Health, Chiba, Japan.
Kazuhiko IshikawaShiga Prefectural Institute of Public Health, Shiga, Japan.
Takayuki ShiomotoIshikawa Prefectural Institute of Public Health and Environmental Science, Ishikawa, Japan.
Kenichi LeeNational Institute of Infectious Diseases, Tokyo, Japan.
Dongchon KangGraduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Koichi AkashiGraduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Makoto OhnishiNational Institute of Infectious Diseases, Tokyo, Japan.
Sunao IyodaNational Institute of Infectious Diseases, Tokyo, Japan.
Tetsuya HayashiGraduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shiga toxin (Stx)-producing

Indexed as

AnimalsHigh-Throughput Nucleotide SequencingHumansPhylogenyPolymorphism, Single NucleotideProphagesSerotypingShiga-Toxigenic Escherichia coliType III Secretion SystemsVirulence FactorsWhole Genome SequencingType III Secretion SystemsVirulence Factorsbacteriophagecomparative genomicsphylogenetic analysisplasmidpopulation structureShiga toxin-producing Escherichia coli O121:H19

Identifiers

PMID34878971
PMCPMC8767318

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.