Evidence map›Paper›PMID 34878788›Full record

ArticleJournal of proteome research2022

Next-Generation Serology by Mass Spectrometry: Readout of the SARS-CoV-2 Antibody Repertoire.

Rafael D Melani, Benjamin J Des Soye, Jared O Kafader, Eleonora Forte, Michael Hollas, Voislav Blagojevic, Fernanda Negrão, John P McGee, Bryon Drown, Cameron Lloyd-Jones and 16 more

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Immunocomplexed Antigen Capture and Identification by Native Top-Down Mass Spectrometry.Journal of the American Society for Mass Spectrometry · 2023
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Antibody glycosylation in COVID-19.Glycoconjugate journal · 2022
    Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 3 institutions in 1 country.

Rafael D MelaniDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0002-0349-235X
Benjamin J Des SoyeDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Jared O KafaderDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0002-5359-264X
Eleonora ForteProteomics Center of Excellence, Evanston, Illinois 60208, United States.
Michael HollasDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0002-0797-3134
Voislav BlagojevicDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Fernanda NegrãoDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
John P McGeeDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Bryon DrownDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Cameron Lloyd-JonesDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Henrique S SecklerDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0001-8989-5303
Jeannie M CamarilloDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Philip D ComptonDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Richard D LeDucDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0002-6951-2923
Bryan EarlyDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Ryan T FellersDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Byoung-Kyu ChoProteomics Center of Excellence, Evanston, Illinois 60208, United States.
Basil Baby MattamanaProteomics Center of Excellence, Evanston, Illinois 60208, United States.
Young Ah GooDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Paul M ThomasDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.
Michelle K AshDepartment of Microbial Pathogens and Immunity, Rush University Medical Center, Chicago, Illinois 60612, United States.
Pavan P BhimalliDepartment of Microbial Pathogens and Immunity, Rush University Medical Center, Chicago, Illinois 60612, United States.
Lena Al-HarthiDepartment of Microbial Pathogens and Immunity, Rush University Medical Center, Chicago, Illinois 60612, United States.
Beverly E ShaDivision of Infectious Diseases, Rush University Medical Center, Chicago, Illinois 60612, United States.
Jeffrey R SchneiderDepartment of Microbial Pathogens and Immunity, Rush University Medical Center, Chicago, Illinois 60612, United States.
Neil L KelleherDepartments of Molecular Biosciences, Chemistry, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0002-8815-3372
Northwestern University · USRush University Medical Center · USAbterra Biosciences (United States) · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LEONIDAS C. PLATANIAS · 1993 to 2026
$153.9M
Northwestern University Clinical and Translational Science Institute (NUCATS)UL1TR001422 · NCATS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI D'AQUILA, RICHARD · 2015 to 2023
$56.8M
TR&D 7: Cell Specific ProteomicsP41GM108569 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2015 to 2024
$13.6M
SampleStream: A Radically Simplified Platform for Protein Sample PreparationR44GM121130 · NIGMS · INTEGRATED PROTEIN TECHNOLOGIES, INC. · PI COMPTON, PHILIP DANIEL · 2019 to 2020
$1.6M
Acquisition of a Thermo Fisher Scientific Q Exactive UHMR mass spectrometerS10OD025194 · OD · NORTHWESTERN UNIVERSITY · PI COMPTON, PHILIP DANIEL · 2018 to 2018
$795k
Top-down proteomic characterization of MEK/ERK in MAPK-driven cancersF32CA246894 · NCI · NORTHWESTERN UNIVERSITY · PI DROWN, BRYON SHANE · 2020 to 2021
$128k
Alzheimer's Disease Characterization via a Novel Native Mass Spectrometry PlatformF31AG069456 · NIA · NORTHWESTERN UNIVERSITY · PI MCGEE, JOHN PHILIP · 2020 to 2021
$84k
NCATS NIH HHS UL1 TR001422NCI NIH HHS F32 CA246894NCI NIH HHS P30 CA060553NIAID NIH HHS HHSN272201400008CNIA NIH HHS F31 AG069456NIGMS NIH HHS P41 GM108569NIGMS NIH HHS R44 GM121130NIH HHS S10 OD025194
6 · The paper itself

Abstract

Methods of antibody detection are used to assess exposure or immunity to a pathogen. Here, we present Ig-MS, a novel serological readout that captures the immunoglobulin (Ig) repertoire at molecular resolution, including entire variable regions in Ig light and heavy chains. Ig-MS uses recent advances in protein mass spectrometry (MS) for multiparametric readout of antibodies, with new metrics like Ion Titer (IT) and Degree of Clonality (DoC) capturing the heterogeneity and relative abundance of individual clones without sequencing of B cells. We applied Ig-MS to plasma from subjects with severe and mild COVID-19 and immunized subjects after two vaccine doses, using the receptor-binding domain (RBD) of the spike protein of SARS-CoV-2 as the bait for antibody capture. Importantly, we report a new data type for human serology, that could use other antigens of interest to gauge immune responses to vaccination, pathogens, or autoimmune disorders.

Indexed as

COVID-19SARS-CoV-2Antibodies, NeutralizingAntibodies, ViralHumansMass SpectrometrySpike Glycoprotein, CoronavirusAntibodies, NeutralizingAntibodies, ViralSpike Glycoprotein, CoronavirusantibodiesCOVID-19individual ion mass spectrometryproteomicsSARS-CoV-2serologytop-down mass spectrometry

Identifiers

PMID34878788
PMCPMC8673472
OpenAlexW4226056251

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.