ArticleGenome biology and evolution2021
Whole-Genome Sequencing of Acer catalpifolium Reveals Evolutionary History of Endangered Species.
Article in Genome biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed.
- Improved Longan Genome Assembly Reveals Insights Into Flowering Mechanisms.Plant biotechnology journal · 2026Article
- A near-complete reassembled haplotype-resolved reference genome of Acer truncatum.Scientific data · 2025Article
- High-resolution genome assembly and population genetic study of the endangered mapleHorticulture research · 2025Article
- The genome sequence of field maple,Wellcome open research · 2025Article
- Genomic Variability Survey inInternational journal of molecular sciences · 2024Article
- A tip of the iceberg: genome survey indicated a complex evolutionary history of Garuga Roxb. species.BMC genomics · 2024Article
- Profiling genome-wide methylation in two maples: Fine-scale approaches to detection with nanopore technology.Evolutionary applications · 2024Article
- De novo genome assembly and genome skims reveal LTRs dominate the genome of a limestone endemic Mountainsnail (Oreohelix idahoensis).BMC genomics · 2022Article
- In Silico Protein Folding Prediction of COVID-19 Mutations and Variants.Biomolecules · 2022Article
- Strategies of tolerance reflected in two North American maple genomes.The Plant journal : for cell and molecular biology · 2022Article
- Chromosome-Level Genome Assembly forFrontiers in plant science · 2022Article
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Authors and funding
10 authors.
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Abstract
Acer catalpifolium is an endangered species restricted to remote localities of West China. Understanding the genomic content and evolution of A. catalpifolium is essential to conservation efforts of this rare and ecologically valuable plant. Here, we report a high-quality genome of A. catalpifolium consisting of ∼654 Mbp and ∼35,132 protein-coding genes. We detected 969 positively selected genes in two Acer genomes compared with four other eudicots, 65 of which were transcription factors. We hypothesize that these positively selected mutations in transcription factors might affect their function and thus contribute to A. catalpifolium's decline-type population. We also identified 179 significantly expanded gene families compared with 12 other eudicots, some of which are involved in stress responses, such as the FRS-FRF family. We inferred that A. catalpifolium has experienced gene family expansions to cope with environmental stress in its evolutionary history. Finally, 109 candidate genes encoding key enzymes in the lignin biosynthesis pathway were identified in A. catalpifolium; of particular note were the large range and high copy number of cinnamyl alcohol dehydrogenase genes. The chromosome-level genome of A. catalpifolium presented here may serve as a fundamental genomic resource for better understanding endangered Acer species, informing future conservation efforts.
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