Evidence map›Paper›PMID 34877933›Full record

ArticleJCI insight2021

Genomic attributes of homology-directed DNA repair deficiency in metastatic prostate cancer.

Navonil De Sarkar, Sayan Dasgupta, Payel Chatterjee, Ilsa Coleman, Gavin Ha, Lisa S Ang, Emily A Kohlbrenner, Sander B Frank, Talina A Nunez, Stephen J Salipante and 12 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 1 country.

Navonil De SarkarDivisions of Human Biology.
Sayan DasguptaVaccine and Infectious Disease, and.
Payel ChatterjeeDivisions of Human Biology.
Ilsa ColemanDivisions of Human Biology.
Gavin HaDivisions of Human Biology.
Lisa S AngDivisions of Human Biology.
Emily A KohlbrennerDivisions of Human Biology.
Sander B FrankDivisions of Human Biology.
Talina A NunezDivisions of Human Biology.
Stephen J SalipanteDepartment of Laboratory Medicine and Pathology and.
Eva CoreyDepartment of Urology, University of Washington, Seattle, Washington, USA.
Colm MorrisseyDepartment of Urology, University of Washington, Seattle, Washington, USA.
Eliezer Van AllenDana-Farber Cancer Institute, Boston, Massachusetts, USA.
Michael T SchweizerDivision of Oncology, Department of Medicine, University of Washington, Seattle, Washington, USA.
Michael C HaffnerDivisions of Human Biology.
Radhika PatelDivisions of Human Biology.
Brian HanrattyDivisions of Human Biology.
Jared M LucasDivisions of Human Biology.
Ruth F DumpitDivisions of Human Biology.
Colin C PritchardDepartment of Laboratory Medicine and Pathology and.
Robert B MontgomeryDivision of Oncology, Department of Medicine, University of Washington, Seattle, Washington, USA.
Peter S NelsonDivisions of Human Biology.
Clinical Research Management · USUniversity of Washington · USDana-Farber Cancer Institute · USFred Hutch Cancer Center · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
TRANSCRIPTOME AND PROTEOME STRATIFICATION OF PROSTATE ADENOCARCINOMA PHENOTYPESP50CA097186 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETER S NELSON · 2002 to 2026
$58.1M
Steroid Metabolism in Castration-Resistant Prostate CancerP01CA163227 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI Henry W. Long · 2013 to 2026
$25.0M
High-Performance Compute Cluster for Comprehensive Cancer and Infectious Diseases ResearchS10OD028685 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRADLEY, PHILIP · 2020 to 2020
$2.0M
Statistical modeling to support population and translational cancer researchR50CA221836 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Roman Gulati · 2017 to 2026
$2.0M
Investigating the Role of DNA Repair Mutations in Prostate Cancer Initiation, Progression, and Susceptibility to Targeted TherapiesF32CA243286 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI FRANK, SANDER BARKLEY · 2019 to 2021
$212k
NCI NIH HHS F32 CA243286NCI NIH HHS P01 CA163227NCI NIH HHS P30 CA015704NCI NIH HHS P50 CA097186NCI NIH HHS R50 CA221836NIH HHS S10 OD028685
6 · The paper itself

Abstract

Cancers with homology-directed DNA repair (HRR) deficiency exhibit high response rates to poly(ADP-ribose) polymerase inhibitors (PARPi) and platinum chemotherapy. Though mutations disrupting BRCA1 and BRCA2 associate with HRR deficiency (HRRd), patterns of genomic aberrations and mutation signatures may be more sensitive and specific indicators of compromised repair. Here, we evaluated whole-exome sequences from 418 metastatic prostate cancers (mPCs) and determined that one-fifth exhibited genomic characteristics of HRRd that included Catalogue Of Somatic Mutations In Cancer mutation signature 3. Notably, a substantial fraction of tumors with genomic features of HRRd lacked biallelic loss of a core HRR-associated gene, such as BRCA2. In this subset, HRRd associated with loss of chromodomain helicase DNA binding protein 1 but not with mutations in serine-protein kinase ATM, cyclin dependent kinase 12, or checkpoint kinase 2. HRRd genomic status was strongly correlated with responses to PARPi and platinum chemotherapy, a finding that supports evaluating biomarkers reflecting functional HRRd for treatment allocation.

Indexed as

AnimalsDisease Models, AnimalDNA Repair-Deficiency DisordersGenomicsHumansMaleMiceNeoplasm MetastasisProstatic NeoplasmsDNA repairOncology

Identifiers

PMID34877933
PMCPMC8675196
OpenAlexW4200237127

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.