Evidence map›Paper›PMID 34877548›Full record

ArticleSTAR protocols2021

Protocol for quantification of the lysosomal degradation of extracellular proteins into mammalian cells.

Ayaka Tomihari, Momoka Chiba, Akira Matsuura, Eisuke Itakura

Open access · goldAbstract read
In one paragraph

Article in STAR protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ayaka TomihariDepartment of Biology, Graduate School of Science and Engineering, Chiba University, Chiba, Japan.
Momoka ChibaDepartment of Biology, Graduate School of Science and Engineering, Chiba University, Chiba, Japan.
Akira MatsuuraDepartment of Biology, Graduate School of Science, Chiba University, Inage-ku, Chiba, Japan.
Eisuke ItakuraDepartment of Biology, Graduate School of Science, Chiba University, Inage-ku, Chiba, Japan.
Chiba University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endocytic internalization of extracellular proteins plays roles in signaling, nutrient uptake, immunity, and extracellular protein quality control. However, there are few protocols for analyzing the lysosomal degradation of extracellular protein. Here, we purified secreted proteins fused with pH-sensitive GFP and acid- and protease-resistant RFP from mammalian cells and describe an internalization assay for mammalian cells. This protocol enables quantification of cellular uptake and lysosomal degradation of protein-of-interest (POI) via cell biological and biochemical analyses. For full details on the use and execution of this protocol, please refer to Itakura et al. (2020).

Indexed as

LysosomesProteinsAntibodies, MonoclonalEndocytosisFlow CytometryHEK293 CellsHumansImmunoblottingLuminescent ProteinsRecombinant ProteinsAntibodies, MonoclonalLuminescent ProteinsProteinsRecombinant ProteinsCell-based AssaysCell BiologyFlow Cytometry/Mass CytometryMolecular/Chemical ProbesProtein expression and purification

Identifiers

PMID34877548
PMCPMC8633370
OpenAlexW3215592888

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.