Evidence map›Paper›PMID 34876592›Full record

ArticleNature communications2021

Delayed induction of type I and III interferons mediates nasal epithelial cell permissiveness to SARS-CoV-2.

Catherine F Hatton, Rachel A Botting, Maria Emilia Dueñas, Iram J Haq, Bernard Verdon, Benjamin J Thompson, Jarmila Stremenova Spegarova, Florian Gothe, Emily Stephenson, Aaron I Gardner and 18 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
16.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 119 citations in OpenAlex.

  1. Trial
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  11. Frontiers in microbiology · 2026
    Article
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  18. Article
  19. Human coronaviruses: activation and antagonism of innate immune responses.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  20. Article

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 4 institutions in 2 countries.

Catherine F Hatton *Translational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-4138-5309
Rachel A Botting *Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0001-9595-4605
Maria Emilia Dueñas *Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-3411-4068
Iram J Haq *Translational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-5795-0440
Bernard Verdon *Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-5804-9419
Benjamin J ThompsonTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-3360-587X
Jarmila Stremenova SpegarovaTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-0710-9266
Florian GotheTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-0421-6610
Emily StephensonBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.
Aaron I GardnerTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0001-8729-9823
Sandra MurphyBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-1130-9295
Jonathan ScottTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
James P GarnettTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-4767-020X
Sean CarriePopulation Health Sciences Institute, Newcastle University, Newcastle upon Tyne, UK.
Jason PowellTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-1199-8406
C M Anjam KhanBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-4381-8729
Lei HuangTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-1996-944X
Rafiqul HussainGenomics Core Facility, Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.
Jonathan CoxheadGenomics Core Facility, Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-6128-9560
Tracey DaveyElectron Microscopy Research Services, Newcastle University, Newcastle upon Tyne, UK.
A John SimpsonTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-4731-7294
Muzlifah HaniffaBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-3927-2084
Sophie HambletonTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0001-7954-3267
Malcolm BrodlieTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0003-4591-8299
Chris WardTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-6954-9611
Matthias TrostBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.
Gary ReynoldsBiosciences Institute, Newcastle University, Newcastle upon Tyne, UK.
Christopher J A DuncanTranslational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK. christopher.duncan@ncl.ac.uk.ORCID http://orcid.org/0000-0003-4181-2315
Newcastle University · GBNewcastle upon Tyne Hospitals NHS Foundation Trust · GBGenomics (United Kingdom) · GBLudwig-Maximilians-Universität München · DE

Funding

Medical Research Council MC_PC_20060Medical Research Council MR/M008797/1Medical Research Council MR/N02995X/1Medical Research Council MR/V028448/1MRF_ MRF-091-0001-RG-GARNEWellcome Trust 207556/Z/17/ZWellcome Trust 211153/Z/18/Z
6 · The paper itself

Abstract

The nasal epithelium is a plausible entry point for SARS-CoV-2, a site of pathogenesis and transmission, and may initiate the host response to SARS-CoV-2. Antiviral interferon (IFN) responses are critical to outcome of SARS-CoV-2. Yet little is known about the interaction between SARS-CoV-2 and innate immunity in this tissue. Here we apply single-cell RNA sequencing and proteomics to a primary cell model of human nasal epithelium differentiated at air-liquid interface. SARS-CoV-2 demonstrates widespread tropism for nasal epithelial cell types. The host response is dominated by type I and III IFNs and interferon-stimulated gene products. This response is notably delayed in onset relative to viral gene expression and compared to other respiratory viruses. Nevertheless, once established, the paracrine IFN response begins to impact on SARS-CoV-2 replication. When provided prior to infection, recombinant IFNβ or IFNλ1 induces an efficient antiviral state that potently restricts SARS-CoV-2 viral replication, preserving epithelial barrier integrity. These data imply that the IFN-I/III response to SARS-CoV-2 initiates in the nasal airway and suggest nasal delivery of recombinant IFNs to be a potential chemoprophylactic strategy.

Indexed as

Antiviral AgentsCells, CulturedCOVID-19Epithelial CellsHumansImmunity, InnateInterferon LambdaInterferonsInterferon Type IKineticsNasal MucosaSARS-CoV-2Signal TransductionViral TropismVirus ReplicationAntiviral AgentsInterferon LambdaInterferonsInterferon Type I

Identifiers

PMID34876592
PMCPMC8651658
OpenAlexW4200355092

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.