Evidence map›Paper›PMID 34876123›Full record

ArticleAnnals of clinical microbiology and antimicrobials2021

The molecular mechanisms of fluoroquinolone resistance found in rectal swab isolates of Enterobacterales from men undergoing a transrectal prostate biopsy: the rationale for targeted prophylaxis.

Katarzyna Piekarska, Katarzyna Zacharczuk, Tomasz Wołkowicz, Mateusz Mokrzyś, Natalia Wolaniuk, Magdalena Nowakowska, Stanisław Szempliński, Jakub Dobruch, Rafał Gierczyński

Open access · goldAbstract read
In one paragraph

Article in Annals of clinical microbiology and antimicrobials, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Trial
  2. Pangenome analysis ofAntimicrobial agents and chemotherapy · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Katarzyna PiekarskaDepartment of Bacteriology, National Institute of Public Health NIH - National Research Institute, Chocimska 24, 00-791, Warsaw, Poland. kpiekarska@pzh.gov.pl.ORCID http://orcid.org/0000-0002-1763-3475
Katarzyna ZacharczukDepartment of Bacteriology, National Institute of Public Health NIH - National Research Institute, Chocimska 24, 00-791, Warsaw, Poland.
Tomasz WołkowiczDepartment of Bacteriology, National Institute of Public Health NIH - National Research Institute, Chocimska 24, 00-791, Warsaw, Poland.
Mateusz MokrzyśDepartment of Urology, St. Anna Hospital, A. Mickiewicza 39, 05-500, Piaseczno, Poland.
Natalia WolaniukDepartment of Bacteriology, National Institute of Public Health NIH - National Research Institute, Chocimska 24, 00-791, Warsaw, Poland.
Magdalena NowakowskaDepartment of Bacteriology, National Institute of Public Health NIH - National Research Institute, Chocimska 24, 00-791, Warsaw, Poland.
Stanisław SzemplińskiDepartment of Urology, Centre of Postgraduate Medical Education, 01-813, Warsaw, Poland.
Jakub DobruchDepartment of Urology, St. Anna Hospital, A. Mickiewicza 39, 05-500, Piaseczno, Poland.
Rafał GierczyńskiDepartment of Bacteriology, National Institute of Public Health NIH - National Research Institute, Chocimska 24, 00-791, Warsaw, Poland.
Narodowy Instytut Zdrowia Publicznego PZH – Państwowy Instytut Badawczy · PLPostgraduate School of Molecular Medicine · PL

Funding

national institute of public health - national institute of hygiene 3/EM/2016
6 · The paper itself

Abstract

backgroundTransrectal ultrasound-guided prostate biopsy (TRUS-Bx) is considered an essential urological procedure for the histological diagnosis of prostate cancer. It is, however, considered a "contaminated" procedure which may lead to infectious complications. Recent studies suggest a significant share of fluoroquinolone-resistant rectal flora in post-biopsy infections.

methodsThe molecular mechanisms of fluoroquinolone resistance, including PMQR (plasmid-mediated quinolone resistance) as well as mutation in the QRDRs (quinolone-resistance determining regions) of gyrA, gyrB, parC and parE, among Enterobacterales isolated from 32 of 48 men undergoing a prostate biopsy between November 2015 and April 2016 were investigated. Before the TRUS-Bx procedure, all the patients received an oral antibiotic containing fluoroquinolones.

resultsIn total, 41 Enterobacterales isolates were obtained from rectal swabs. The MIC of ciprofloxacin and the presence of common PMQR determinants were investigated in all the isolates. Nine (21.9%) isolates carried PMQR with qnrS as the only PMQR agent detected. DNA sequencing of the QRDRs in 18 Enterobacterales (E. coli n = 17 and E. cloacae n = 1) isolates with ciprofloxacin MIC ≥ 0.25 mg/l were performed. Substitutions in the following codons were found: GyrA-83 [Ser → Leu, Phe] and 87 [Asp → Asn]; GyrB codon-605 [Met → Leu], ParC codons-80 [Ser → Ile, Arg] and 84 [Glu → Gly, Met, Val, Lys], ParE codons-458 [Ser → Ala], 461 [Glu → Ala] and 512 [Ala → Thr]. Six isolates with ciprofloxacin MIC ≥ 2 mg/l had at least one mutation in GyrA together with qnrS.

conclusionsThis study provides information on the common presence of PMQRs among Enterobacterales isolates with ciprofloxacin MIC ≥ 0.25 mg/l, obtained from men undergoing TRUS-Bx. This fact may partially explain why some men develop post-TRUS-Bx infections despite ciprofloxacin prophylaxis.

Indexed as

AgedAged, 80 and overAnti-Bacterial AgentsBacterial ProteinsBiopsyCiprofloxacinCodonDNA GyraseDNA Topoisomerase IVDrug Resistance, BacterialEnterobacteriaceaeEnterobacteriaceae InfectionsEscherichia coliFluoroquinolonesHumansImage-Guided BiopsyAnti-Bacterial AgentsBacterial ProteinsCiprofloxacinCodonDNA GyraseDNA Topoisomerase IVFluoroquinolonesEnterobacteriaceaeFluoroquinolone resistancePMQR and mutationsPost-biopsy infectionsProstate biopsy

Identifiers

PMID34876123
PMCPMC8650336
OpenAlexW4200211841

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.