Evidence map›Paper›PMID 34875230›Full record

ArticleCurrent biology : CB2022

Coordinated repression of pro-differentiation genes via P-bodies and transcription maintains Drosophila intestinal stem cell identity.

Kasun Buddika, Yi-Ting Huang, Ishara S Ariyapala, Alex Butrum-Griffith, Sam A Norrell, Alex M O'Connor, Viraj K Patel, Samuel A Rector, Mark Slovan, Mallory Sokolowski and 3 more

Open access · greenAbstract read
In one paragraph

Article in Current biology : CB, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Science advances · 2025
    Article
  4. Article
  5. Review
  6. Control of cell state transitions by post-transcriptional regulation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  7. Article
  8. Review
  9. Insects · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Eukaryotic mRNA Decapping Activation.Frontiers in genetics · 2022
    Review
  16. I-KCKT allows dissection-free RNA profiling of adultDevelopment (Cambridge, England) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Kasun BuddikaDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Yi-Ting HuangDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Ishara S AriyapalaDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Alex Butrum-GriffithDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Sam A NorrellDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Alex M O'ConnorDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Viraj K PatelDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Samuel A RectorDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Mark SlovanDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Mallory SokolowskiDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Yasuko KatoDepartment of Applied Biology, Kyoto Institute of Technology, Matsugasaki, Sakyo-ku, Kyoto 606-8585, Japan.
Akira NakamuraDepartment of Germline Development, Institute of Molecular Embryology and Genetics, Kumamoto University, 2-2-1 Honjo, Kumamoto 860-0811, Japan.
Nicholas S SokolDepartment of Biology, Indiana University, Bloomington, IN 47405, USA. Electronic address: nssokol@gmail.com.
Indiana University Bloomington · USKumamoto University · JPKyoto Institute of Technology · JP

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
DROSOPHILA GENOMICS RESOURCE CENTERP40OD010949 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Andrew Zelhof · 2012 to 2026
$9.4M
Post-transcriptional Control of Adaptive Tissue GrowthR01GM124220 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI CALVI, BRIAN R · 2017 to 2020
$1.3M
Acquisition of a DeltaVision OMX-SR Imaging SystemS10OD024988 · OD · INDIANA UNIVERSITY INDIANAPOLIS · PI WALCZAK, CLAIRE E · 2018 to 2018
$600k
NIGMS NIH HHS R01 GM124220NIH HHS P40 OD010949NIH HHS P40 OD018537NIH HHS S10 OD024988
6 · The paper itself

Abstract

The role of processing bodies (P-bodies), key sites of post-transcriptional control, in adult stem cells remains poorly understood. Here, we report that adult Drosophila intestinal stem cells, but not surrounding differentiated cells such as absorptive enterocytes (ECs), harbor P-bodies that contain Drosophila orthologs of mammalian P-body components DDX6, EDC3, EDC4, and LSM14A/B. A targeted RNAi screen in intestinal progenitor cells identified 39 previously known and 64 novel P-body regulators, including Patr-1, a gene necessary for P-body assembly. Loss of Patr-1-dependent P-bodies leads to a loss of stem cells that is associated with inappropriate expression of EC-fate gene nubbin. Transcriptomic analysis of progenitor cells identifies a cadre of such weakly transcribed pro-differentiation transcripts that are elevated after P-body loss. Altogether, this study identifies a P-body-dependent repression activity that coordinates with known transcriptional repression programs to maintain a population of in vivo stem cells in a state primed for differentiation.

Indexed as

DrosophilaDrosophila ProteinsAnimalsCell DifferentiationIntestinesMammalsStem CellsDrosophila ProteinsFMRPintestinal stem cellsISCsMe31BPatr-1P-bodiesstress granulesTRAL

Identifiers

PMID34875230
PMCPMC8792327
OpenAlexW4200030098

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.