Evidence map›Paper›PMID 34872548›Full record

ArticleBMC pulmonary medicine2021

The pattern of alternative splicing in lung adenocarcinoma shows novel events correlated with tumorigenesis and immune microenvironment.

Gongjun Wang, Weiwei Qi, Liwei Shen, Shasha Wang, Ruoxi Xiao, Wenqian Li, Yuqi Zhang, Xiaoqian Bian, Libin Sun, Wensheng Qiu

Open access · goldAbstract read
In one paragraph

Article in BMC pulmonary medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 85% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Gongjun Wang *Department of Oncology, The Affiliated Hospital of Qingdao University, Qingdao, Shandong, China.
Weiwei Qi *Department of Oncology, The Affiliated Hospital of Qingdao University, Qingdao, Shandong, China.
Liwei ShenDepartment of Oncology, Women and Children's Hospital, Qingdao University, Qingdao, Shandong, China.
Shasha WangDepartment of Oncology, The Affiliated Hospital of Qingdao University, Qingdao, Shandong, China.
Ruoxi XiaoDepartment of Medcine, Qingdao University, Qingdao, China.
Wenqian LiDepartment of Medcine, Qingdao University, Qingdao, China.
Yuqi ZhangDepartment of Medcine, Qingdao University, Qingdao, China.
Xiaoqian BianDepartment of Medcine, Qingdao University, Qingdao, China.
Libin SunDepartment of Oncology, The Affiliated Hospital of Qingdao University, Qingdao, Shandong, China. mycharites@hotmail.com.
Wensheng QiuDepartment of Oncology, The Affiliated Hospital of Qingdao University, Qingdao, Shandong, China. wsqiuqd@163.com.
Qingdao University · CNAffiliated Hospital of Qingdao University · CN

Funding

Beijing Xisike Clinical Oncology Research Foundation Y-BMS2019-038Beijing Xisike Clinical Oncology Research Foundation Y-XD2019-119Wu Jieping Medical Foundation 320.6750.2020-12-19
6 · The paper itself

Abstract

Lung adenocarcinoma (LUAD) is the leading cause of cancer deaths worldwide due to the lack of early diagnostic markers and specific drugs. Previous studies have shown the association of LUAD growth with aberrant alternative splicing (AS). Herein, clinical data of 535 tumor tissues and 59 normal tissues were extracted from The Cancer Genome Atlas (TCGA) database. Each sample was analyzed using the ESTIMATE algorithm; a comparison between higher and lower score groups (stromal or immune) was made to determine the overall- and progression-free survival-related differentially expressed AS (DEAS) events. We then performed unsupervised clustering of these DEASs, followed by determining their relationship with survival rate, immune cells, and the tumor microenvironment (TME). Next, two prognostic signatures were developed using bioinformatics tools to explore the prognosis of cases with LUAD. Five OS- and six PFS-associated DEAS events were implemented to establish a prognostic risk score model. When compared to the high-risk group (HRG), the PFS and OS of the low-risk group (LRG) were found to be considerable. Additionally, a better prognosis was found considerably associated with the ESTIMATE score of the patients as well as immune cells infiltration. Our analysis of AS events in LUAD not only helps to clarify the tumorigenesis mechanism of AS but also provides ideas for revealing potential prognostic biomarkers and therapeutic targets.

Indexed as

Adenocarcinoma of LungAlternative SplicingBiomarkers, TumorLung NeoplasmsAlgorithmsCarcinogenesisChinaDatabases, GeneticDisease-Free SurvivalHumansPrognosisRisk AssessmentSurvival RateTumor MicroenvironmentBiomarkers, TumorAlternative splicingImmuneLUADPrognosisTumor microenvironment

Identifiers

PMID34872548
PMCPMC8647402
OpenAlexW4226268335

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.