Evidence map›Paper›PMID 34871815›Full record

ArticleBiomedical journal2021

Lipopeptides against COVID-19 RNA-dependent RNA polymerase using molecular docking.

Bo Xia, Minyi Luo, Li Pang, Xia Liu, Youjin Yi

Open access · goldAbstract read
In one paragraph

Article in Biomedical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Therapeutic applications of interface-mimicking peptides for targeting the SARS-CoV-2 NSP12-NSP8 RdRp complex.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  2. Antimicrobial Activity ofInternational journal of molecular sciences · 2025
    Review
  3. Article
  4. Does regulation hold the key to optimizing lipopeptide production inFrontiers in bioengineering and biotechnology · 2024
    Review
  5. One day at a time.Biomedical journal · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Bo XiaCollege of Food Science and Technology, Hunan Agricultural University, Changsha, Hunan, China. Electronic address: julinomber2@sina.com.
Minyi LuoCollege of Food Science and Technology, Hunan Agricultural University, Changsha, Hunan, China.
Li PangCollege of Horticulture, Hunan Agricultural University, Changsha, Hunan, China.
Xia LiuCollege of Food Science and Technology, Hunan Agricultural University, Changsha, Hunan, China. Electronic address: liuxiaspr@aliyun.com.
Youjin YiCollege of Food Science and Technology, Hunan Agricultural University, Changsha, Hunan, China.
Hunan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCoronavirus disease 2019 (COVID-19) is caused by a novel virus that is responsible for the largest pandemic in recent times. Although numerous studies have explored methods to cope with COVID-19 and targeted drugs and vaccines have been developed, the spread of disease remains rapid due to the high infectivity and mutation capability of SARS-CoV-2, the causative virus of COVID-19. Therefore, there is an urgent necessity to seek more efficient treatments and approaches to combat the disease.

methodsIn this study, molecular docking was used to predict the binding of different lipopeptides, which exhibit significant biological functions, to the RNA-dependent RNA polymerase (also known as nsp12) of SARS-CoV-2, the central component of coronaviral replication and transcription machinery.

resultsThe results showed that seven lipopeptides bound to nsp12 at the same location as the FDA-approved drug remdesivir, with higher affinities. Notably, iron-chelating ferrocin A (ferrocin A-iron complex [FAC]) bound to nsp12 most tightly, releasing up to 9.1 kcal mol

conclusionsOur findings suggest that the abovementioned lipopeptides can tightly bind to nsp12, and thus represent promising drug candidates for anti-coronaviral treatments with the potential to fight SARS-CoV-2.

Indexed as

COVID-19Antiviral AgentsHumansLipopeptidesMolecular Docking SimulationRNA-Dependent RNA PolymeraseSARS-CoV-2Antiviral AgentsLipopeptidesRNA-Dependent RNA PolymeraseCOVID-19LipopeptideMolecular dockingnsp12SARS-CoV-2

Identifiers

PMID34871815
PMCPMC8641408
OpenAlexW4200452295

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.