Evidence map›Paper›PMID 34871445›Full record

ArticleNucleic acids research2022

piRBase: integrating piRNA annotation in all aspects.

Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Zhiye Ying, Haopeng Yu, Yanyan Li, Yi Zhao, Xiaoxi Zeng and 2 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  13. Phthalate exposure to adult mice alters non-coding RNAs in cauda epididymosomes.Environmental pollution (Barking, Essex : 1987) · 2025
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8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jiajia WangWest China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu 610041, China.
Yirong ShiKey Laboratory of RNA Biology, Center for Big Data Research in Health, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Honghong ZhouWest China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu 610041, China.
Peng ZhangKey Laboratory of RNA Biology, Center for Big Data Research in Health, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.ORCID 0000-0001-9303-1639
Tingrui SongKey Laboratory of RNA Biology, Center for Big Data Research in Health, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.
Zhiye YingWest China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu 610041, China.
Haopeng YuWest China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu 610041, China.
Yanyan LiWest China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu 610041, China.
Yi ZhaoWest China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu 610041, China.ORCID 0000-0001-6046-8420
Xiaoxi ZengWest China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu 610041, China.
Shunmin HeWest China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu 610041, China.ORCID 0000-0002-7294-0865
Runsheng ChenWest China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu 610041, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Piwi-interacting RNAs are a type of small noncoding RNA that have various functions. piRBase is a manually curated resource focused on assisting piRNA functional analysis. piRBase release v3.0 is committed to providing more comprehensive piRNA related information. The latest release covers >181 million unique piRNA sequences, including 440 datasets from 44 species. More disease-related piRNAs and piRNA targets have been collected and displayed. The regulatory relationships between piRNAs and targets have been visualized. In addition to the reuse and expansion of the content in the previous version, the latest version has additional new content, including gold standard piRNA sets, piRNA clusters, piRNA variants, splicing-junction piRNAs, and piRNA expression data. In addition, the entire web interface has been redesigned to provide a better experience for users. piRBase release v3.0 is free to access, browse, search, and download at http://bigdata.ibp.ac.cn/piRBase.

Indexed as

Databases, Nucleic AcidGenomeUser-Computer InterfaceAnimalsDatasets as TopicHumansInternetMolecular Sequence AnnotationMultigene FamilyRNA, Small InterferingRNA SplicingRNA, Small Interfering

Identifiers

PMID34871445
PMCPMC8728152

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.