ArticleFrontiers in plant science2021
Identification and Validation of a Core Single-Nucleotide Polymorphism Marker Set for Genetic Diversity Assessment, Fingerprinting Identification, and Core Collection Development in Bottle Gourd.
Article in Frontiers in plant science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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13 citing papers in PubMed.
- Genetic Diversity and SNP-Based Fingerprinting of 94 Pumpkin Cultivars: Database Establishment and Population Analysis.Plants (Basel, Switzerland) · 2026Article
- Development and application of core collection, KASP markers and SNP-based DNA fingerprinting inFrontiers in plant science · 2026Article
- Near-Infrared Spectroscopy and Machine Learning for Fast Quality Prediction of Bottle Gourd.Foods (Basel, Switzerland) · 2025Article
- Screening of a core SNP set for the seedling identification of Saccharina japonica cultivars in northern China.PloS one · 2025Article
- An initial exploration of core collection construction and DNA fingerprinting inFrontiers in plant science · 2025Article
- Investigation of genetic diversity in the loach Misgurnus anguillicaudatus revealed by whole-genome resequencing.BMC genomics · 2024Article
- Establishment and application of a SNP molecular identification system inFrontiers in microbiology · 2024Article
- Genome characterization and taxonomy of Actinomyces acetigenes sp. nov., and Actinomyces stomatis sp. nov., previously isolated from the human oral cavity.BMC genomics · 2023Article
- CoreSNP: an efficient pipeline for core marker profile selection from genome-wide SNP datasets in crops.BMC plant biology · 2023Article
- Construction of SNP fingerprint and population genetic analysis of honeysuckle germplasm resources in China.Frontiers in plant science · 2023Article
- A pilot-scale comparison between single and double-digest RAD markers generated using GBS strategy in sesame (Sesamum indicum L.).PloS one · 2023Article
- Development of cassava core collections based on morphological and agronomic traits and SNPS markers.Frontiers in plant science · 2023Article
- Elucidation of the Flavor Aspects and Flavor-Associated Genomic Regions in Bottle Gourd (Foods (Basel, Switzerland) · 2022Article
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10 authors.
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Abstract
Germplasm collections are indispensable resources for the mining of important genes and variety improvement. To preserve and utilize germplasm collections in bottle gourd, we identified and validated a highly informative core single-nucleotide polymorphism (SNP) marker set from 1,100 SNPs. This marker set consisted of 22 uniformly distributed core SNPs with abundant polymorphisms, which were established to have strong representativeness and discriminatory power based on analyses of 206 bottle gourd germplasm collections and a multiparent advanced generation inter-cross (MAGIC) population. The core SNP markers were used to assess genetic diversity and population structure, and to fingerprint important accessions, which could provide an optimized procedure for seed authentication. Furthermore, using the core SNP marker set, we developed an accessible core population of 150 accessions that represents 100% of the genetic variation in bottle gourds. This core population will make an important contribution to the preservation and utilization of bottle gourd germplasm collections, cultivar identification, and marker-assisted breeding.
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