Evidence map›Paper›PMID 34865197›Full record

ArticleJournal of microbiology (Seoul, Korea)2021

Regulation of iron homeostasis by peroxide-sensitive CatR, a Fur-family regulator in Streptomyces coelicolor.

Yeonbum Kim, Jung-Hye Roe, Joo-Hong Park, Yong-Joon Cho, Kang-Lok Lee

Abstract read
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In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yeonbum KimDepartment of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Jung-Hye RoeDepartment of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Joo-Hong ParkDepartment of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Yong-Joon ChoDepartment of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea. yongjoon@gmail.com.
Kang-Lok LeeDepartment of Biology Education, IALS, Gyeongsang National University, Jinju, 52828, Republic of Korea. leekl@gnu.ac.kr.
Seoul National University · KRGyeongsang National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CatR, a peroxide-sensing transcriptional repressor of Fur family, can de-repress the transcription of the catA gene encoding catalase upon peroxide stress in Streptomyces coelicolor. Since CatR-regulated genes other than catA and its own gene catR have not been identified in detail, the understanding of the role of CatR regulon is very limited. In this study, we performed transcriptomic analysis to identify genes influenced by both ΔcatR mutation and hydrogen peroxide treatment. Through ChIP-qPCR and other analyses, a new consensus sequence was found in CatR-responsive promoter region of catR gene and catA operon for direct regulation. In addition, vtlA (SCO2027) and SCO4983 were identified as new members of the CatR regulon. Expression levels of iron uptake genes were reduced by hydrogen peroxide and a DmdR1 binding sequence was identified in promoters of these genes. The increase in free iron by hydrogen peroxide was thought to suppress the iron import system by DmdR1. A putative exporter protein VtlA regulated by CatR appeared to reduce intracellular iron to prevent oxidative stress. The name vtlA (VIT1-like transporter) was proposed for iron homeostasis related gene SCO2027.

Indexed as

Bacterial ProteinsCatalaseDNA-Binding ProteinsGene Expression ProfilingGene Expression Regulation, BacterialGenes, BacterialHomeostasisHydrogen PeroxideIronOperonOxidative StressPromoter Regions, GeneticRegulonRepressor ProteinsStreptomyces coelicolorTranscription FactorsBacterial ProteinsCatalaseCatR protein, bacteriaDNA-Binding ProteinsHydrogen PeroxideIronRepressor ProteinsTranscription FactorsCatRDmdR1iron homeostasisoxidative stressStreptomyces coelicolor

Identifiers

PMID34865197
OpenAlexW4200462368

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.