Evidence map›Paper›PMID 34865162›Full record

ArticlePlant physiology2022

Auxin biosynthesis maintains embryo identity and growth during BABY BOOM-induced somatic embryogenesis.

Mengfan Li, Justyna Wrobel-Marek, Iris Heidmann, Anneke Horstman, Baojian Chen, Ricardo Reis, Gerco C Angenent, Kim Boutilier

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Plant physiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
11.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 70 citations in OpenAlex.

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  18. How does light regulate plant regeneration?Frontiers in plant science · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Mengfan LiBioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands.ORCID 0000-0002-3767-133X
Justyna Wrobel-MarekFaculty of Natural Sciences, Institute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, Katowice, 40-032, Poland.ORCID 0000-0003-4947-9297
Iris HeidmannBioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands.ORCID 0000-0002-4389-2120
Anneke HorstmanBioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands.ORCID 0000-0003-2971-2047
Baojian ChenBioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands.ORCID 0000-0002-5933-1141
Ricardo ReisBioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands.ORCID 0000-0002-9683-8195
Gerco C AngenentBioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands.ORCID 0000-0003-4051-1078
Kim BoutilierBioscience, Wageningen University and Research, Wageningen, 6700 AA, Netherlands.ORCID 0000-0001-6110-5939
Wageningen University & Research · NLEnza Zaden (Netherlands) · NLUniversity of Silesia in Katowice · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Somatic embryogenesis is a type of plant cell totipotency where embryos develop from nonreproductive (vegetative) cells without fertilization. Somatic embryogenesis can be induced in vitro by auxins, and by ectopic expression of embryo-expressed transcription factors like the BABY BOOM (BBM) AINTEGUMENTA-LIKE APETALA2/ETHYLENE RESPONSE FACTOR domain protein. These different pathways are thought to converge to promote auxin response and biosynthesis, but the specific roles of the endogenous auxin pathway in somatic embryogenesis induction have not been well-characterized. Here we show that BBM transcriptionally regulates the YUCCA3 (YUC3) and YUC8 auxin biosynthesis genes during BBM-mediated somatic embryogenesis in Arabidopsis (Arabidopsis thaliana) seedlings. BBM induced local and ectopic YUC3 and YUC8 expression in seedlings, which coincided with increased DR5 auxin response and indole-3-acetic acid (IAA) biosynthesis and with ectopic expression of the WOX2 embryo reporter. YUC-driven auxin biosynthesis was required for BBM-mediated somatic embryogenesis, as the number of embryogenic explants was reduced by ca. 50% in yuc3 yuc8 mutants and abolished after chemical inhibition of YUC enzyme activity. However, a detailed YUC inhibitor time-course study revealed that YUC-dependent IAA biosynthesis is not required for the re-initiation of totipotent cell identity in seedlings. Rather, YUC enzymes are required later in somatic embryo development for the maintenance of embryo identity and growth. This study resolves a long-standing question about the role of endogenous auxin biosynthesis in transcription factor-mediated somatic embryogenesis and also provides an experimental framework for understanding the role of endogenous auxin biosynthesis in other in planta and in vitro embryogenesis systems.

Indexed as

ArabidopsisGene Expression Regulation, PlantGenes, PlantGenetic VariationGenotypeIndoleacetic AcidsMutationPlant Growth RegulatorsPlant Somatic Embryogenesis TechniquesSeedsTranscription FactorsIndoleacetic AcidsPlant Growth RegulatorsTranscription Factors

Identifiers

PMID34865162
PMCPMC8825264
OpenAlexW4200349011

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.