Evidence map›Paper›PMID 34863825›Full record

ArticleInternational journal of biological macromolecules2022

Emergence of unique SARS-CoV-2 ORF10 variants and their impact on protein structure and function.

Sk Sarif Hassan, Kenneth Lundstrom, Ángel Serrano-Aroca, Parise Adadi, Alaa A A Aljabali, Elrashdy M Redwan, Amos Lal, Ramesh Kandimalla, Tarek Mohamed Abd El-Aziz, Pabitra Pal Choudhury and 9 more

Open access · greenAbstract read
In one paragraph

Article in International journal of biological macromolecules, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Structural insights into ORF10 recognition by ZYG11B.Biochemical and biophysical research communications · 2022
    Article
  11. Review
  12. Article
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 18 institutions in 13 countries.

Sk Sarif HassanDepartment of Mathematics, Pingla Thana Mahavidyalaya, Maligram, Paschim Medinipur 721140, West Bengal, India. Electronic address: sksarifhassan@pinglacollege.ac.in.
Kenneth LundstromPanTherapeutics, Rte de Lavaux 49, CH1095 Lutry, Switzerland.
Ángel Serrano-ArocaBiomaterials and Bioengineering Lab, Centro de Investigacion Traslacional San Alberto Magno, Universidad Catolica de Valencia San Vicente Martir, c/Guillem de Castro, 94, 46001 Valencia, Valencia, Spain. Electronic address: angel.serrano@ucv.es.
Parise AdadiDepartment of Food Science, University of Otago, Dunedin 9054, New Zealand.
Alaa A A AljabaliDepartment of Pharmaceutics and Pharmaceutical Technology, Yarmouk University, Faculty of Pharmacy, Irbid 566, Jordan. Electronic address: alaaj@yu.edu.jo.
Elrashdy M RedwanBiological Science Department, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia; Therapeutic and Protective Proteins Laboratory, Protein Research Department, Genetic Engineering and Biotechnology Research Institute, City of Scientific Research and Technological Applications, New Borg EL-Arab 21934, Alexandria, Egypt. Electronic address: lradwan@kau.edu.sa.
Amos LalDepartment of Medicine, Division of Pulmonary and Critical Care Medicine, Mayo Clinic, Rochester, MN, USA.
Ramesh KandimallaApplied Biology, CSIR-Indian Institute of Chemical Technology, Uppal Road, Tarnaka, Hyderabad 500007, Telangana, India; Department of Biocemistry, Kakatiya Medical College, Warangal, Telangana, India.
Tarek Mohamed Abd El-AzizDepartment of Cellular and Integrative Physiology, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Dr, San Antonio, TX 78229-3900, USA; Zoology Department, Faculty of Science, Minia University, El-Minia 61519, Egypt. Electronic address: mohamedt1@uthscsa.edu.
Pabitra Pal ChoudhuryIndian Statistical Institute, Applied Statistics Unit, 203 B T Road, Kolkata 700108, India. Electronic address: pabitrapalchoudhury@gmail.com.
Gajendra Kumar AzadDepartment of Zoology, Patna University, Patna, Bihar, India. Electronic address: gkazad@patnauniversity.ac.in.
Samendra P SherchanDepartment of Environmental Health Sciences, Tulane University, New Orleans, LA, 70112, USA. Electronic address: sshercha@tulane.edu.
Gaurav ChauhanSchool of Engineering and Sciences, Tecnologico de Monterrey, 64849 Monterrey, Nuevo Leon, Mexico. Electronic address: gchauhan@tec.mx.
Murtaza TambuwalaSchool of Pharmacy and Pharmaceutical Science, Ulster University, Coleraine BT52 1SA, Northern Ireland, UK. Electronic address: m.tambuwala@ulster.ac.uk.
Kazuo TakayamaCenter for iPS Cell Research and Application, Kyoto University, Kyoto 6068507, Japan. Electronic address: kazuo.takayama@cira.kyoto-u.ac.jp.
Debmalya BarhCentre for Genomics and Applied Gene Technology, Institute of Integrative Omics and Applied Biotechnology (IIOAB), Nonakuri, Purba Medinipur 721172, West Bengal, India; Department of Genetics, Ecology and Evolution, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte 31270-901, Brazil. Electronic address: dr.barh@gmail.com.
Giorgio PaluDepartment of Molecular Medicine, University of Padova, Via Gabelli 63, 35121 Padova, Italy. Electronic address: giorgio.palu@unipd.it.
Pallab BasuSchool of Physics, University of the Witwatersrand, Johannesburg, Braamfontein 2000, 721140, South Africa. Electronic address: pallabbasu@gmail.com.
Vladimir N UverskyDepartment of Molecular Medicine, Morsani College of Medicine, University of South Florida, Tampa, FL 33612, USA. Electronic address: vuversky@usf.edu.
Indian Institute of Chemical Technology · INIndian Statistical Institute · INKing Abdulaziz University · SAKyoto University · JPMayo Clinic in Arizona · USPanthera Corporation · USPatna University · INTecnológico de Monterrey · MXThe University of Texas Health Science Center at San Antonio · USTulane University · USUniversidade Federal de Minas Gerais · BRUniversity of Otago · NZUniversity of Padua · ITUniversity of South Florida · USUniversity of the Witwatersrand · ZAUniversity of Ulster · GBValencia Catholic University Saint Vincent Martyr · ESYarmouk University · JO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The devastating impact of the ongoing coronavirus disease 2019 (COVID-19) on public health, caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has made targeting the COVID-19 pandemic a top priority in medical research and pharmaceutical development. Surveillance of SARS-CoV-2 mutations is essential for the comprehension of SARS-CoV-2 variant diversity and their impact on virulence and pathogenicity. The SARS-CoV-2 open reading frame 10 (ORF10) protein interacts with multiple human proteins CUL2, ELOB, ELOC, MAP7D1, PPT1, RBX1, THTPA, TIMM8B, and ZYG11B expressed in lung tissue. Mutations and co-occurring mutations in the emerging SARS-CoV-2 ORF10 variants are expected to impact the severity of the virus and its associated consequences. In this article, we highlight 128 single mutations and 35 co-occurring mutations in the unique SARS-CoV-2 ORF10 variants. The possible predicted effects of these mutations and co-occurring mutations on the secondary structure of ORF10 variants and host protein interactomes are presented. The findings highlight the possible effects of mutations and co-occurring mutations on the emerging 140 ORF10 unique variants from secondary structure and intrinsic protein disorder perspectives.

Indexed as

Open Reading FramesViral ProteinsCOVID-19Host Microbial InteractionsHumansMutationSARS-CoV-2Viral ProteinsAnd ubiquitin ligase complexCo-occurring mutationsIntrinsic protein disorderORF10SARS-CoV-2

Identifiers

PMID34863825
PMCPMC8635690
OpenAlexW3214998569

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.