Evidence map›Paper›PMID 34862756›Full record

ArticleJournal of cachexia, sarcopenia and muscle2022

Epigenome-wide association study of sarcopenia: findings from the Hertfordshire Sarcopenia Study (HSS).

Elie Antoun, Emma S Garratt, Andrea Taddei, Mark A Burton, Sheila J Barton, Phil Titcombe, Leo D Westbury, Alicia Baczynska, Eugenia Migliavacca, Jerome N Feige and 13 more

Open access · goldAbstract read
In one paragraph

Article in Journal of cachexia, sarcopenia and muscle, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 39 citations in OpenAlex.

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  15. Trigonelline is an NADNature metabolism · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 2 countries.

Elie AntounHuman Development and Health Academic Unit, Faculty of Medicine, University of Southampton, Southampton, UK.
Emma S GarrattHuman Development and Health Academic Unit, Faculty of Medicine, University of Southampton, Southampton, UK.
Andrea TaddeiBenevolent AI, London, UK.
Mark A BurtonHuman Development and Health Academic Unit, Faculty of Medicine, University of Southampton, Southampton, UK.
Sheila J BartonMRC Lifecourse Epidemiology Centre, University of Southampton, Southampton, UK.
Phil TitcombeMRC Lifecourse Epidemiology Centre, University of Southampton, Southampton, UK.
Leo D WestburyMRC Lifecourse Epidemiology Centre, University of Southampton, Southampton, UK.
Alicia BaczynskaAcademic Geriatric Medicine, Faculty of Medicine, University of Southampton, Southampton, UK.
Eugenia MigliavaccaNestle Research, EPFL Innovation Park, Lausanne, Switzerland.
Jerome N FeigeNestle Research, EPFL Innovation Park, Lausanne, Switzerland.
Holly E SydallMRC Lifecourse Epidemiology Centre, University of Southampton, Southampton, UK.
Elaine DennisonMRC Lifecourse Epidemiology Centre, University of Southampton, Southampton, UK.
Richard DoddsAGE Research Group, Translational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
Helen C RobertsNIHR Southampton Biomedical Research Centre, University of Southampton & University Hospital Southampton NHS Foundation Trust, Southampton, UK.
Peter RichardsonBenevolent AI, London, UK.
Avan A SayerAGE Research Group, Translational and Clinical Research Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.
Sarah ShawMRC Lifecourse Epidemiology Centre, University of Southampton, Southampton, UK.
Cyrus CooperNIHR Southampton Biomedical Research Centre, University of Southampton & University Hospital Southampton NHS Foundation Trust, Southampton, UK.
Joanna D HolbrookBenevolent AI, London, UK.
Harnish P PatelNIHR Southampton Biomedical Research Centre, University of Southampton & University Hospital Southampton NHS Foundation Trust, Southampton, UK.
Keith M GodfreyHuman Development and Health Academic Unit, Faculty of Medicine, University of Southampton, Southampton, UK.
Karen A LillycropHuman Development and Health Academic Unit, Faculty of Medicine, University of Southampton, Southampton, UK.ORCID 0000-0001-7350-5489
EpiGen Global Research Consortium
MRC Lifecourse Epidemiology Unit · GBUniversity Hospital Southampton NHS Foundation Trust · GBBenevolentAI (United Kingdom) · GBUniversity of Southampton · GBNestlé (Switzerland) · CHNewcastle upon Tyne Hospitals NHS Foundation Trust · GB

Funding

Interdisciplinary Research Network on Early Adversity & Later Life ReversibilityU24AG047867 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GODFREY, KEITH, MCEWEN, BRUCE S. · 2014 to 2018
$954k
Reversibility Network: Interventions to Reverse or Remediate Effects of Early Life Adversity on Ageing ProcessesR24AG065174 · NIA · BROWN UNIVERSITY · PI GODFREY, KEITH, LOUCKS, ERIC · 2020 to 2020
$421k
Arthritis Research UKBiotechnology and Biological Sciences Research CouncilBritish Heart Foundation RG/15/17/31749Department of Health NF-SI-055-0042Medical Research Council G0400491Medical Research Council G0601019Medical Research Council MC_PC_21000Medical Research Council MC_PC_21001Medical Research Council MC_PC_21003Medical Research Council MC_ST_U2055Medical Research Council MC_U147585819Medical Research Council MC_U147585824Medical Research Council MC_U147585827Medical Research Council MC_U47585827Medical Research Council MC_UP_A620_1014Medical Research Council MC_UP_A620_1015Medical Research Council MC_UU_12011/1Medical Research Council MC_UU_12011/2Medical Research Council MC_UU_12011/4Medical Research Council MC_UU_20/4Medical Research Council MR/J000094/1NIA NIH HHS R24 AG065174NIA NIH HHS U24 AG047867NIA NIH HHS U24AG047867Versus Arthritis 17702
6 · The paper itself

Abstract

backgroundSarcopenia is the age-related loss of muscle mass, strength, and function. Epigenetic processes such as DNA methylation, which integrate both genetic and environmental exposures, have been suggested to contribute to the development of sarcopenia. This study aimed to determine whether differences in the muscle methylome are associated with sarcopenia and its component measures: grip strength, appendicular lean mass index (ALMi), and gait speed.

methodsUsing the Infinium Human MethylationEPIC BeadChip, we measured DNA methylation in vastus lateralis muscle biopsies of 83 male participants (12 with sarcopenia) with a mean (standard deviation) age of 75.7 (3.6) years from the Hertfordshire Sarcopenia Study (HSS) and Hertfordshire Sarcopenia Study extension (HSSe) and examined associations with sarcopenia and its components. Pathway, histone mark, and transcription factor enrichment of the differentially methylated CpGs (dmCpGs) were determined, and sodium bisulfite pyrosequencing was used to validate the sarcopenia-associated dmCpGs. Human primary myoblasts (n = 6) isolated from vastus lateralis muscle biopsies from male individuals from HSSe were treated with the EZH2 inhibitor GSK343 to assess how perturbations in epigenetic processes may impact myoblast differentiation and fusion, measured by PAX7 and MYHC immunocytochemistry, and mitochondrial bioenergetics determined using the Seahorse XF96.

resultsSarcopenia was associated with differential methylation at 176 dmCpGs (false discovery rate ≤ 0.05) and 141 differentially methylated regions (Stouffer ≤ 0.05). The sarcopenia-associated dmCpGs were enriched in genes associated with myotube fusion (P = 1.40E-03), oxidative phosphorylation (P = 2.78E-02), and voltage-gated calcium channels (P = 1.59E-04). ALMi was associated with 71 dmCpGs, grip strength with 49 dmCpGs, and gait speed with 23 dmCpGs (false discovery rate ≤ 0.05). There was significant overlap between the dmCpGs associated with sarcopenia and ALMi (P = 3.4E-35), sarcopenia and gait speed (P = 4.78E-03), and sarcopenia and grip strength (P = 7.55E-06). There was also an over-representation of the sarcopenia, ALMi, grip strength, and gait speed-associated dmCpGs with sites of H3K27 trimethylation (all P ≤ 0.05) and amongst EZH2 target genes (all P ≤ 0.05). Furthermore, treatment of human primary myoblasts with the EZH2 inhibitor GSK343 inhibitor led to an increase in PAX7 expression (P ≤ 0.05), decreased myotube fusion (P = 0.043), and an increase in ATP production (P = 0.008), with alterations in the DNA methylation of genes involved in oxidative phosphorylation and myogenesis.

conclusionsThese findings show that differences in the muscle methylome are associated with sarcopenia and individual measures of muscle mass, strength, and function in older individuals. This suggests that changes in the epigenetic regulation of genes may contribute to impaired muscle function in later life.

Indexed as

EpigenomeSarcopeniaAgedDNA MethylationEpigenesis, GeneticHand StrengthHumansMaleDNA methylationEZH2MyoblastsSarcopenia

Identifiers

PMID34862756
PMCPMC8818655
OpenAlexW3217735310

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.