Evidence map›Paper›PMID 34862647›Full record

ArticleLetters in applied microbiology2022

Shotgun metagenome sequencing of a Sudanese toombak snuff tobacco: genetic attributes of a high tobacco-specific nitrosamine containing smokeless tobacco product.

R E Tyx, A J Rivera, S B Stanfill, G S Zaatari, C H Watson

Open access · greenAbstract read
In one paragraph

Article in Letters in applied microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

R E TyxDivision of Laboratory Sciences at the Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID https://orcid.org/0000-0002-7514-9286
A J RiveraDivision of Laboratory Sciences at the Centers for Disease Control and Prevention, Atlanta, GA, USA.
S B StanfillDivision of Laboratory Sciences at the Centers for Disease Control and Prevention, Atlanta, GA, USA.
G S ZaatariDepartment of Pathology and Laboratory Medicine, American University of Beirut, Beirut, Lebanon.
C H WatsonDivision of Laboratory Sciences at the Centers for Disease Control and Prevention, Atlanta, GA, USA.
Centers for Disease Control and Prevention · USAmerican University of Beirut · LB

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

The most alarming aspect of the Sudanese toombak smokeless tobacco is that it contains high levels of highly toxic tobacco-specific nitrosamines (TSNAs). Understanding the microbiology of toombak is of relevance because TSNAs are an indirect result of microbial-mediated nitrate reductions. We conducted shotgun metagenomic sequencing on a toombak product for which relevant features are presented here. The microbiota was composed of over 99% Bacteria. The most abundant taxa included Actinobacteria, specifically the genera Enteractinococcus and Corynebacterium, while Firmicutes were represented by the family Bacillaceae and the genus Staphylococcus. Selected gene targets were nitrate reduction and transport, antimicrobial resistance, and other genetic transference mechanisms. Canonical nitrate reduction and transport genes (i.e. nar) were found for Enteractinococcus and Corynebacterium while various species of Staphylococcus exhibited a notable number of antimicrobial resistance and genetic transference genes. The nitrate reduction activity of the microbiota in toombak is suspected to be a contributing factor to its high levels of TSNAs. Additionally, the presence of antimicrobial resistance and transference genes could contribute to deleterious effects on oral and gastrointestinal health of the end user. Overall, the high toxicity and increased incidences of cancer and oral disease of toombak users warrants further investigation into the microbiology of toombak.

Indexed as

NitrosaminesTobacco, SmokelessMetagenomeMetagenomicsNitrosaminesmetagenomicsmicrobial communitiesnitrosaminestoombak

Identifiers

PMID34862647
PMCPMC9204801
OpenAlexW3216383689

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.