Evidence map›Paper›PMID 34862451›Full record

ArticleModern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc2022

Clonality assessment and detection of clonal diversity in classic Hodgkin lymphoma by next-generation sequencing of immunoglobulin gene rearrangements.

Diede A G van Bladel, Michiel van den Brand, Jos Rijntjes, Samhita Pamidimarri Naga, Demi L C M Haacke, Jeroen A C W Luijks, Konnie M Hebeda, J Han J M van Krieken, Patricia J T A Groenen, Blanca Scheijen

Erratum issuedOpen access · hybridAbstract readCase Reports
In one paragraph

Article in Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

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  6. Diagnostic and prognostic molecular pathology of lymphoid malignancies.Virchows Archiv : an international journal of pathology · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Diede A G van BladelDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Michiel van den BrandDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID 0000-0001-8871-6254
Jos RijntjesDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Samhita Pamidimarri NagaRadboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands.
Demi L C M HaackeDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Jeroen A C W LuijksDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Konnie M HebedaDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
J Han J M van KriekenDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Patricia J T A GroenenDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.
Blanca ScheijenDepartment of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands. blanca.scheijen@radboudumc.nl.
Radboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clonality analysis in classic Hodgkin lymphoma (cHL) is of added value for correctly diagnosing patients with atypical presentation or histology reminiscent of T cell lymphoma, and for establishing the clonal relationship in patients with recurrent disease. However, such analysis has been hampered by the sparsity of malignant Hodgkin and Reed-Sternberg (HRS) cells in a background of reactive immune cells. Recently, the EuroClonality-NGS Working Group developed a novel next-generation sequencing (NGS)-based assay and bioinformatics platform (ARResT/Interrogate) to detect immunoglobulin (IG) gene rearrangements for clonality testing in B-cell lymphoproliferations. Here, we demonstrate the improved performance of IG-NGS compared to conventional BIOMED-2/EuroClonality analysis to detect clonal gene rearrangements in 16 well-characterized primary cHL cases within the IG heavy chain (IGH) and kappa light chain (IGK) loci. This was most obvious in formalin-fixed paraffin-embedded (FFPE) tissue specimens, where three times more clonal cases were detected with IG-NGS (9 cases) compared to BIOMED-2 (3 cases). In total, almost four times more clonal rearrangements were detected in FFPE with IG-NGS (N = 23) as compared to BIOMED-2/EuroClonality (N = 6) as judged on identical IGH and IGK targets. The same clonal rearrangements were also identified in paired fresh frozen cHL samples. To validate the neoplastic origin of the detected clonotypes, IG-NGS clonality analysis was performed on isolated HRS cells, demonstrating identical clonotypes as detected in cHL whole-tissue specimens. Interestingly, IG-NGS and HRS single-cell analysis after DEPArray™ digital sorting revealed rearrangement patterns and copy number variation profiles indicating clonal diversity and intratumoral heterogeneity in cHL. Our data demonstrate improved performance of NGS-based detection of IG gene rearrangements in cHL whole-tissue specimens, providing a sensitive molecular diagnostic assay for clonality assessment in Hodgkin lymphoma.

Indexed as

Genes, ImmunoglobulinHodgkin DiseaseDNA Copy Number VariationsGene RearrangementHigh-Throughput Nucleotide SequencingHumansImmunoglobulin Heavy ChainsImmunoglobulin kappa-ChainsImmunoglobulin Heavy ChainsImmunoglobulin kappa-Chains

Identifiers

PMID34862451
PMCPMC9174053
OpenAlexW3215226986

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.