Evidence map›Paper›PMID 34862384›Full record

ArticleNature communications2021

Directed evolution of and structural insights into antibody-mediated disruption of a stable receptor-ligand complex.

Luke F Pennington, Pascal Gasser, Silke Kleinboelting, Chensong Zhang, Georgios Skiniotis, Alexander Eggel, Theodore S Jardetzky

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Antibodies targeting a shared epitope exploit IgE allostery to drive distinct functional outcomes.Proceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Luke F PenningtonDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID 0000-0002-7947-8714
Pascal GasserDepartment of Rheumatology and Immunology, University Hospital Bern, Bern, Switzerland.ORCID 0000-0003-3708-1660
Silke KleinboeltingDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Chensong ZhangDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Georgios SkiniotisDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID 0000-0003-0238-7846
Alexander EggelDepartment of Rheumatology and Immunology, University Hospital Bern, Bern, Switzerland.ORCID 0000-0001-8746-3339
Theodore S JardetzkyDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA, 94305, USA. tjardetz@stanford.edu.ORCID 0000-0002-3664-0072
Stanford University · USUniversity of Bern · CHStanford Medicine · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Project 3: T CellsU54CA260517 · NCI · STANFORD UNIVERSITY · PI DAVIS, MARK MORRIS · 2020 to 2024
$10.4M
Accelerated dissociation of IgE receptor complexesR01AI115469 · NIAID · STANFORD UNIVERSITY · PI Theodore S Jardetzky · 2017 to 2026
$3.8M
Suppression of basophil activation by IgE glycovariantsR01HL141493 · NHLBI · STANFORD UNIVERSITY · PI JARDETZKY, THEODORE S · 2018 to 2021
$1.6M
Disrupting IgE:FceR1a Interactions: Novel Therapies for Allergic DiseaseF30AI120510 · NIAID · STANFORD UNIVERSITY · PI PENNINGTON, LUKE FRANKLIN · 2017 to 2019
$115k
NCI NIH HHS U54 CA260517NHLBI NIH HHS R01 HL141493NIAID NIH HHS F30 AI120510NIAID NIH HHS R01 AI115469NIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

Antibody drugs exert therapeutic effects via a range of mechanisms, including competitive inhibition, allosteric modulation, and immune effector mechanisms. Facilitated dissociation is an additional mechanism where antibody-mediated "disruption" of stable high-affinity macromolecular complexes can potentially enhance therapeutic efficacy. However, this mechanism is not well understood or utilized therapeutically. Here, we investigate and engineer the weak disruptive activity of an existing therapeutic antibody, omalizumab, which targets IgE antibodies to block the allergic response. We develop a yeast display approach to select for and engineer antibody disruptive efficiency and generate potent omalizumab variants that dissociate receptor-bound IgE. We determine a low resolution cryo-EM structure of a transient disruption intermediate containing the IgE-Fc, its partially dissociated receptor and an antibody inhibitor. Our results provide a conceptual framework for engineering disruptive inhibitors for other targets, insights into the failure in clinical trials of the previous high affinity omalizumab HAE variant and anti-IgE antibodies that safely and rapidly disarm allergic effector cells.

Indexed as

Protein EngineeringAnimalsCell MembraneCryoelectron MicroscopyCrystallography, X-RayHealthy VolunteersHumansImmunoglobulin ELigandsMiceMice, TransgenicOmalizumabPrimary Cell CultureReceptors, IgESf9 CellsSpodopteraImmunoglobulin ELigandsOmalizumabReceptors, IgE

Identifiers

PMID34862384
PMCPMC8642555
OpenAlexW3216720903

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.