Evidence map›Paper›PMID 34862382›Full record

Observational studyNature communications2021

A deep learning framework identifies dimensional representations of Alzheimer's Disease from brain structure.

Zhijian Yang, Ilya M Nasrallah, Haochang Shou, Junhao Wen, Jimit Doshi, Mohamad Habes, Guray Erus, Ahmed Abdulkadir, Susan M Resnick, Marilyn S Albert and 8 more

Abstract readMulticenter StudyObservational StudyValidation Study
In one paragraph

Observational study in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Discovering Heterogeneous Neurodegenerative Disease Patterns From MRI Data for Improved Prediction.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2027
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Zhijian Yang *Center for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-7863-827X
Ilya M Nasrallah *Center for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0003-2346-7562
Haochang ShouCenter for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-3043-047X
Junhao WenCenter for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0003-2077-3070
Jimit DoshiCenter for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA, USA.
Mohamad HabesCenter for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA, USA.
Guray ErusCenter for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA, USA.
Ahmed AbdulkadirCenter for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0003-4679-8081
Susan M ResnickLaboratory of Behavioral Neuroscience, National Institute on Aging, Baltimore, MD, USA.
Marilyn S AlbertDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Paul MaruffFlorey Institute of Neuroscience and Mental Health, University of Melbourne, Melbourne, VIC, Australia.
Jurgen FrippCSIRO Health and Biosecurity, Australian e-Health Research Centre CSIRO, Brisbane, Queensland, Australia.
John C MorrisKnight Alzheimer Disease Research Center, Washington University in St. Louis, St. Louis, MO, USA.
David A WolkCenter for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA, USA.
Christos DavatzikosCenter for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA, USA. Christos.Davatzikos@pennmedicine.upenn.edu.ORCID 0000-0002-1025-8561
iSTAGING Consortium
Baltimore Longitudinal Study of Aging (BLSA)
Alzheimer’s Disease Neuroimaging Initiative (ADNI)

Funding

Project 2 MeasurementU19AG033655 · NIA · JOHNS HOPKINS UNIVERSITY · PI MARILYN S. ALBERT · 2014 to 2026
$51.5M
Research Education CoreP30AG066462 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Miguel Arce · 2020 to 2026
$30.1M
Research Education ComponentP30AG066507 · NIA · JOHNS HOPKINS UNIVERSITY · PI MARILYN S. ALBERT · 2020 to 2026
$29.3M
Research Education ComponentP30AG072979 · NIA · UNIVERSITY OF PENNSYLVANIA · PI DAVID A WOLK · 2021 to 2026
$24.8M
Wake Forest University School of Medicine Alzheimer's Disease Research CenterP30AG072947 · NIA · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI SUZANNE CRAFT · 2021 to 2026
$24.3M
South Texas Alzheimer's Disease Research CenterP30AG066546 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Mohamad Habes · 2021 to 2026
$24.0M
Ultrascale Machine Learning to Empower Discovery in Alzheimers Disease BiobanksU01AG068057 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Christos Davatzikos, Heng Huang · 2020 to 2026
$20.7M
Multicultural Community Dementia ScreeningR01AG071514 · NIA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI GALVIN, JAMES E · 2021 to 2025
$13.8M
Preclinical AD ConsortiumRF1AG059869 · NIA · JOHNS HOPKINS UNIVERSITY · PI ALBERT, MARILYN S. · 2018 to 2018
$7.7M
Machine Learning and Large-scale Imaging analytics for dimensional representations of brain trajectories in aging and preclinical Alzheimer's Disease: The brain aging chart and the iSTAGING consortiumRF1AG054409 · NIA · UNIVERSITY OF PENNSYLVANIA · PI DAVATZIKOS, CHRISTOS · 2017 to 2023
$6.3M
Biomedical Image Computing and Informatics ClusterS10OD023495 · OD · UNIVERSITY OF PENNSYLVANIA · PI DAVATZIKOS, CHRISTOS · 2017 to 2017
$1.9M
ADSP Follow-up in Multi-Ethnic Cohorts via Endophenotypes, Omics & Model SystemsU01AG052409 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI FORNAGE, MYRIAM, SESHADRI, SUDHA · 2016 to 2020
$1.6M
NIA NIH HHS P30 AG066462NIA NIH HHS P30 AG066507NIA NIH HHS P30 AG066546NIA NIH HHS P30 AG072947NIA NIH HHS P30 AG072979NIA NIH HHS R01 AG071514NIA NIH HHS RF1 AG054409NIA NIH HHS RF1 AG059869NIA NIH HHS U01 AG052409NIA NIH HHS U01 AG068057NIA NIH HHS U19 AG033655NIDA NIH HHS HHSN271201600059CNIH HHS S10 OD023495
6 · The paper itself

Abstract

Heterogeneity of brain diseases is a challenge for precision diagnosis/prognosis. We describe and validate Smile-GAN (SeMI-supervised cLustEring-Generative Adversarial Network), a semi-supervised deep-clustering method, which examines neuroanatomical heterogeneity contrasted against normal brain structure, to identify disease subtypes through neuroimaging signatures. When applied to regional volumes derived from T1-weighted MRI (two studies; 2,832 participants; 8,146 scans) including cognitively normal individuals and those with cognitive impairment and dementia, Smile-GAN identified four patterns or axes of neurodegeneration. Applying this framework to longitudinal data revealed two distinct progression pathways. Measures of expression of these patterns predicted the pathway and rate of future neurodegeneration. Pattern expression offered complementary performance to amyloid/tau in predicting clinical progression. These deep-learning derived biomarkers offer potential for precision diagnostics and targeted clinical trial recruitment.

Indexed as

Deep LearningImage Processing, Computer-AssistedAgedAged, 80 and overAlzheimer DiseaseBrainCase-Control StudiesCluster AnalysisCognitive DysfunctionFemaleHealthy VolunteersHumansLongitudinal StudiesMagnetic Resonance ImagingMaleMiddle Aged

Identifiers

PMID34862382
PMCPMC8642554

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.