Evidence map›Paper›PMID 34862378›Full record

ArticleNature communications2021

Find and cut-and-transfer (FiCAT) mammalian genome engineering.

Maria Pallarès-Masmitjà, Dimitrije Ivančić, Júlia Mir-Pedrol, Jessica Jaraba-Wallace, Tommaso Tagliani, Baldomero Oliva, Amal Rahmeh, Avencia Sánchez-Mejías, Marc Güell

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 51 citations in OpenAlex.

  1. Mining and engineering of activeSynthetic and systems biotechnology · 2027
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  17. A Manual for Genome and Transcriptome Engineering.IEEE reviews in biomedical engineering · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Maria Pallarès-Masmitjà *Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain.ORCID 0000-0002-7317-7793
Dimitrije Ivančić *Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain.
Júlia Mir-PedrolDepartment of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain.ORCID 0000-0001-6104-9260
Jessica Jaraba-WallaceDepartment of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain.
Tommaso TaglianiDepartment of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain.
Baldomero OlivaDepartment of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain.ORCID 0000-0003-0702-0250
Amal RahmehDepartment of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain.
Avencia Sánchez-Mejías *Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain. avencia.sanchez-mejias@upf.edu.
Marc Güell *Department of Health and Experimental Sciences, Pompeu Fabra University, Barcelona, Spain. marc.guell@upf.edu.ORCID 0000-0003-4000-7912
Universitat Pompeu Fabra · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While multiple technologies for small allele genome editing exist, robust technologies for targeted integration of large DNA fragments in mammalian genomes are still missing. Here we develop a gene delivery tool (FiCAT) combining the precision of a CRISPR-Cas9 (find module), and the payload transfer efficiency of an engineered piggyBac transposase (cut-and-transfer module). FiCAT combines the functionality of Cas9 DNA scanning and targeting DNA, with piggyBac donor DNA processing and transfer capacity. PiggyBac functional domains are engineered providing increased on-target integration while reducing off-target events. We demonstrate efficient delivery and programmable insertion of small and large payloads in cellulo (human (Hek293T, K-562) and mouse (C2C12)) and in vivo in mouse liver. Finally, we evolve more efficient versions of FiCAT by generating a targeted diversity of 394,000 variants and undergoing 4 rounds of evolution. In this work, we develop a precise and efficient targeted insertion of multi kilobase DNA fragments in mammalian genomes.

Indexed as

AnimalsCell LineCRISPR-Cas SystemsDNA Transposable ElementsElectroporationFemaleGene EditingHumansLiverMaleMiceProtein EngineeringTransposasesDNA Transposable ElementsTransposases

Identifiers

PMID34862378
PMCPMC8642419
OpenAlexW3216850292

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.