Evidence map›Paper›PMID 34861428›Full record

ArticleGene expression patterns : GEP2022

Candidate positive targets of LHX6 and LHX8 transcription factors in the developing upper jaw.

Jeffry Cesario, Sara Ha, Julie Kim, Niam Kataria, Juhee Jeong

Open access · greenAbstract read
In one paragraph

Article in Gene expression patterns : GEP, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jeffry CesarioDepartment of Molecular Pathobiology, New York University College of Dentistry, 345 E. 24th Street, New York, NY, 10010, USA.
Sara HaDepartment of Molecular Pathobiology, New York University College of Dentistry, 345 E. 24th Street, New York, NY, 10010, USA.
Julie KimDepartment of Molecular Pathobiology, New York University College of Dentistry, 345 E. 24th Street, New York, NY, 10010, USA.
Niam KatariaDepartment of Molecular Pathobiology, New York University College of Dentistry, 345 E. 24th Street, New York, NY, 10010, USA.
Juhee JeongDepartment of Molecular Pathobiology, New York University College of Dentistry, 345 E. 24th Street, New York, NY, 10010, USA. Electronic address: jj78@nyu.edu.
New York University · US

Funding

Genetic regulation of embryonic head mesenchyme patterningR01DE026798 · NIDCR · NEW YORK UNIVERSITY · PI JEONG, JUHEE · 2017 to 2021
$2.1M
Function and regulation of Lhx genes in craniofacial developmentR00DE019486 · NIDCR · NEW YORK UNIVERSITY · PI JEONG, JUHEE · 2011 to 2013
$728k
NIDCR NIH HHS R00 DE019486NIDCR NIH HHS R01 DE026798
6 · The paper itself

Abstract

Craniofacial development is controlled by a large number of genes, which interact with one another to form a complex gene regulatory network (GRN). Key components of GRN are signaling molecules and transcription factors. Therefore, identifying targets of core transcription factors is an important part of the overall efforts toward building a comprehensive and accurate model of GRN. LHX6 and LHX8 are transcription factors expressed in the oral mesenchyme of the first pharyngeal arch (PA1), and they are crucial regulators of palate and tooth development. Previously, we performed genome-wide transcriptional profiling and chromatin immunoprecipitation to identify target genes of LHX6 and LHX8 in PA1, and described a set of genes repressed by LHX. However, there has not been any discussion of the genes positively regulated by LHX6 and LHX8. In this paper, we revisited the above datasets to identify candidate positive targets of LHX in PA1. Focusing on those with known connections to craniofacial development, we performed RNA in situ hybridization to confirm the changes in expression in Lhx6;Lhx8 mutant. We also confirmed the binding of LHX6 to several putative enhancers near the candidate target genes. Together, we have uncovered novel connections between Lhx and other important regulators of craniofacial development, including Eya1, Barx1, Rspo2, Rspo3, and Wnt11.

Indexed as

Gene Expression Regulation, DevelopmentalTranscription FactorsLIM-Homeodomain ProteinsMaxillaPalateLIM-Homeodomain ProteinsTranscription FactorsChIP-seqCraniofacial developmentFirst pharyngeal archLHX6LHX8

Identifiers

PMID34861428
PMCPMC8930537
OpenAlexW3216890934

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.