Evidence map›Paper›PMID 34860583›Full record

ArticleScience immunology2021

DDX17 is an essential mediator of sterile NLRC4 inflammasome activation by retrotransposon RNAs.

Shao-Bin Wang, Siddharth Narendran, Shuichiro Hirahara, Akhil Varshney, Felipe Pereira, Ivana Apicella, Meenakshi Ambati, Vidya L Ambati, Praveen Yerramothu, Kameshwari Ambati and 14 more

Open access · greenAbstract read
In one paragraph

Article in Science immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 50 citations in OpenAlex.

  1. Trial
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  3. YBX1 regulates RNA polymerase III transcripts to prevent inflammation.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  10. [Silencing DDX17 inhibits proliferation and migration of pulmonary arterial smooth muscle cellsNan fang yi ke da xue xue bao = Journal of Southern Medical University · 2025
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 8 institutions in 3 countries.

Shao-Bin WangCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.ORCID 0000-0002-6699-9406
Siddharth NarendranCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.ORCID 0000-0002-9220-8049
Shuichiro HiraharaCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.
Akhil VarshneyCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.
Felipe PereiraCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.ORCID 0000-0001-8884-2816
Ivana ApicellaCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.
Meenakshi AmbatiCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.
Vidya L AmbatiCenter for Digital Image Evaluation, Charlottesville, VA, USA.
Praveen YerramothuCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.
Kameshwari AmbatiCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.
Yosuke NagasakaCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.
Dionne ArgyleCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.ORCID 0000-0002-1947-2177
Peirong HuangCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.ORCID 0000-0003-2793-1473
Kirstie L BakerDoheny Eye Institute, Los Angeles, Los Angeles, CA, USA.ORCID 0000-0003-3953-4352
Kenneth M MarionDoheny Eye Institute, Los Angeles, Los Angeles, CA, USA.ORCID 0000-0003-1275-5729
Kartik GuptaDepartment of Surgery, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0001-8828-7963
Bo LiuDepartment of Surgery, University of Wisconsin-Madison, Madison, WI, USA.
David R HintonDepartments of Pathology and Ophthalmology, USC Roski Eye Institute, Keck School of Medicine of the University of Southern California, Los Angeles, CA, USA.
Scott W CannaPediatric Rheumatology & RK Mellon Institute for Pediatric Research, Children's Hospital of Pittsburgh of UPMC, Pittsburgh, PA, USA.ORCID 0000-0003-3837-5337
Tamer SallamDivision of Cardiology, Department of Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.ORCID 0000-0001-7144-7393
Srinivas R SaddaDoheny Eye Institute, Los Angeles, Los Angeles, CA, USA.
Nagaraj KerurCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.
Bradley D GelfandCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.ORCID 0000-0003-4619-9409
Jayakrishna AmbatiCenter for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, VA, USA.ORCID 0000-0003-1622-6365
University of Virginia · USCenter for Digital Image Evaluation · USDoheny Eye Institute · USUniversity of California, Los Angeles · USUniversity of Wisconsin–Madison · USAravind Eye Hospital · INChildren's Hospital of Pittsburgh · USSouthern California Eye Institute · US

Funding

Form and function of our Janus faced genomeDP1GM114862 · NIGMS · UNIVERSITY OF VIRGINIA · PI AMBATI, JAYAKRISHNA · 2014 to 2018
$4.0M
RNA-binding proteins in atherosclerosisR01HL139549 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Tamer Sallam · 2018 to 2026
$3.3M
Visual system and cognitive biology in normal animals versus in an animal model of Alzheimer's disease with or without diabetes treated with solo or dual inflammasome inhibitorsR01EY031039 · NEI · UNIVERSITY OF VIRGINIA · PI AMBATI, JAYAKRISHNA, GELFAND, BRADLEY DAVID · 2020 to 2024
$3.2M
Non-canonical cGAS signaling in DNA damage responseR01AI148741 · NIAID · UNIVERSITY OF VIRGINIA · PI KERUR, NAGARAJ · 2020 to 2025
$3.1M
Non-canonical inflammasome in activation in RPE degenerationR01EY029799 · NEI · UNIVERSITY OF VIRGINIA · PI AMBATI, JAYAKRISHNA · 2019 to 2022
$2.7M
Licensing LncRNAs in AtherosclerosisR01HL149766 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SALLAM, TAMER · 2021 to 2024
$2.5M
Antigen-independent suppression of ocular angiogenesis via the Fc receptorR01EY028027 · NEI · UNIVERSITY OF VIRGINIA · PI AMBATI, JAYAKRISHNA, GELFAND, BRADLEY DAVID · 2018 to 2022
$2.2M
DICER1 deficiency in aberrant chorioretinal neovascularization - Administrative Supplement OKT RequestR01EY032512 · NEI · UNIVERSITY OF VIRGINIA · PI GELFAND, BRADLEY DAVID · 2021 to 2024
$2.1M
Long Non-coding RNAs in the Regulation of Adipogenesis and ObesityR01DK118086 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SALLAM, TAMER · 2018 to 2022
$1.9M
Non-canonical NLRP3 Inflammasome Activation in Geographic AtrophyR00EY024336 · NEI · UNIVERSITY OF VIRGINIA · PI KERUR, NAGARAJ · 2016 to 2018
$747k
Telomerase in choroidal neovascularizationR21EY030651 · NEI · UNIVERSITY OF VIRGINIA · PI KERUR, NAGARAJ · 2019 to 2020
$444k
NEI NIH HHS R00 EY024336NEI NIH HHS R01 EY028027NEI NIH HHS R01 EY029799NEI NIH HHS R01 EY031039NEI NIH HHS R01 EY032512NEI NIH HHS R21 EY030651NHLBI NIH HHS R01 HL139549NHLBI NIH HHS R01 HL149766NIAID NIH HHS R01 AI148741NIDDK NIH HHS R01 DK118086NIGMS NIH HHS DP1 GM114862
6 · The paper itself

Abstract

Detection of microbial products by multiprotein complexes known as inflammasomes is pivotal to host defense against pathogens. Nucleotide-binding domain leucine-rich repeat (NLR) CARD domain containing 4 (NLRC4) forms an inflammasome in response to bacterial products; this requires their detection by NLR family apoptosis inhibitory proteins (NAIPs), with which NLRC4 physically associates. However, the mechanisms underlying sterile NLRC4 inflammasome activation, which is implicated in chronic noninfectious diseases, remain unknown. Here, we report that endogenous short interspersed nuclear element (SINE) RNAs, which promote atrophic macular degeneration (AMD) and systemic lupus erythematosus (SLE), induce NLRC4 inflammasome activation independent of NAIPs. We identify DDX17, a DExD/H box RNA helicase, as the sensor of SINE RNAs that licenses assembly of an inflammasome comprising NLRC4, NLR pyrin domain–containing protein 3, and apoptosis-associated speck-like protein–containing CARD and induces caspase-1 activation and cytokine release. Inhibiting DDX17-mediated NLRC4 inflammasome activation decreased interleukin-18 release in peripheral blood mononuclear cells of patients with SLE and prevented retinal degeneration in an animal model of AMD. Our findings uncover a previously unrecognized noncanonical NLRC4 inflammasome activated by endogenous retrotransposons and provide potential therapeutic targets for SINE RNA–driven diseases.

Indexed as

AnimalsApoptosis Regulatory ProteinsCalcium-Binding ProteinsCells, CulturedDEAD-box RNA HelicasesInflammasomesMiceMice, Inbred C57BLMice, KnockoutRetroelementsRNAApoptosis Regulatory ProteinsCalcium-Binding ProteinsDdx17 protein, mouseDEAD-box RNA HelicasesInflammasomesIpaf protein, mouseRetroelementsRNA

Identifiers

PMID34860583
PMCPMC8767314
OpenAlexW3214813985

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.