Evidence map›Paper›PMID 34860546›Full record

ArticleScience advances2021

Rapid test to assess the escape of SARS-CoV-2 variants of concern.

Jacob T Heggestad, Rhett J Britton, David S Kinnamon, Simone A Wall, Daniel Y Joh, Angus M Hucknall, Lyra B Olson, Jack G Anderson, Anna Mazur, Cameron R Wolfe and 7 more

Abstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Jacob T HeggestadDepartment of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC 27708, USA.ORCID 0000-0001-5217-6735
Rhett J BrittonDepartment of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC 27708, USA.ORCID 0000-0002-2411-3195
David S KinnamonDepartment of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC 27708, USA.ORCID 0000-0001-9463-6613
Simone A WallDepartment of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC 27708, USA.
Daniel Y JohDepartment of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC 27708, USA.
Angus M HucknallDepartment of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC 27708, USA.
Lyra B OlsonDepartment of Pharmacology and Cancer Biology, Duke University School of Medicine, Durham, NC 27710, USA.ORCID 0000-0003-2783-8244
Jack G AndersonCenter for Applied Genomics and Precision Medicine, Department of Medicine, Duke University, Durham, NC 27710, USA.
Anna MazurCenter for Applied Genomics and Precision Medicine, Department of Medicine, Duke University, Durham, NC 27710, USA.
Cameron R WolfeDivision of Infectious Diseases, Department of Medicine, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0002-5365-5030
Thomas H OguinDepartment of Medicine and the Duke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.ORCID 0000-0001-8959-4025
Bruce A SullengerDepartment of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC 27708, USA.ORCID 0000-0002-5113-5541
Thomas W BurkeCenter for Applied Genomics and Precision Medicine, Department of Medicine, Duke University, Durham, NC 27710, USA.ORCID 0000-0003-0592-5822
Bryan D KraftDivision of Pulmonary, Allergy, and Critical Care Medicine, Department of Medicine, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0001-6545-8803
Gregory D SempowskiDepartment of Medicine and the Duke Human Vaccine Institute, Duke University School of Medicine, Durham, NC 27710, USA.ORCID 0000-0003-0391-6594
Christopher W WoodsCenter for Applied Genomics and Precision Medicine, Department of Medicine, Duke University, Durham, NC 27710, USA.ORCID 0000-0001-7240-2453
Ashutosh ChilkotiDepartment of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, NC 27708, USA.ORCID 0000-0002-1569-2228

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI Laura Fish · 1985 to 2026
$174.8M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007171 · NIGMS · DUKE UNIVERSITY · PI KONTOS, CHRISTOPHER D · 1985 to 2021
$31.2M
Regional Biocontainment Laboratory (RBL)UC6AI058607 · NIAID · DUKE UNIVERSITY · PI WILLIAMS, R SANDERS · 2003 to 2005
$16.3M
Medical Scientist Training Program Training GrantT32GM145449 · NIGMS · DUKE UNIVERSITY · PI Christopher D Kontos · 2022 to 2026
$6.6M
A Fully Integrated Point-of-Care Test for EbolaR01AI150888 · NIAID · DUKE UNIVERSITY · PI CHILKOTI, ASHUTOSH · 2020 to 2024
$3.4M
Multiplex point-of-care test for diagnosis, prognosis and serology of COVID19R01AI159992 · NIAID · DUKE UNIVERSITY · PI CHILKOTI, ASHUTOSH · 2021 to 2023
$1.5M
Role of S-nitrosothiols in Akt1 signaling and pneumonia resolutionK08HL130557 · NHLBI · DUKE UNIVERSITY · PI KRAFT, BRYAN D. · 2017 to 2021
$591k
NCI NIH HHS P30 CA014236NHLBI NIH HHS K08 HL130557NIAID NIH HHS R01 AI150888NIAID NIH HHS R01 AI159992NIAID NIH HHS UC6 AI058607NIGMS NIH HHS T32 GM007171NIGMS NIH HHS T32 GM145449
6 · The paper itself

Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants are concerning in the ongoing coronavirus disease 2019 (COVID-19) pandemic. Here, we developed a rapid test, termed CoVariant-SCAN, that detects neutralizing antibodies (nAbs) capable of blocking interactions between the angiotensin-converting enzyme 2 receptor and the spike protein of wild-type (WT) SARS-CoV-2 and three other variants: B.1.1.7, B.1.351, and P.1. Using CoVariant-SCAN, we assessed neutralization/blocking of monoclonal antibodies and plasma from COVID-19–positive and vaccinated individuals. For several monoclonal antibodies and most plasma samples, neutralization against B.1.351 and P.1 variants is diminished relative to WT, while B.1.1.7 is largely cross-neutralized. We also showed that we can rapidly adapt the platform to detect nAbs against an additional variant—B.1.617.2 (Delta)—without reengineering or reoptimizing the assay. Results using CoVariant-SCAN are consistent with live virus neutralization assays and demonstrate that this easy-to-deploy test could be used to rapidly assess nAb response against multiple SARS-CoV-2 variants.

Identifiers

PMID34860546
PMCPMC8641938

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.