Evidence map›Paper›PMID 34860543›Full record

ArticleScience advances2021

FOXN1 forms higher-order nuclear condensates displaced by mutations causing immunodeficiency.

Ioanna A Rota, Adam E Handel, Stefano Maio, Fabian Klein, Fatima Dhalla, Mary E Deadman, Stanley Cheuk, Joseph A Newman, Yale S Michaels, Saulius Zuklys and 21 more

Abstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Informed clinical decisions by outfoxing human FOXN1 variants.The Journal of allergy and clinical immunology · 2025
    Review
  4. Sterile production of interferons in the thymus.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Review
  5. Generation and repair of thymic epithelial cells.The Journal of experimental medicine · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Comprehensive phenotypic analysis of diverse FOXN1 variants.The Journal of allergy and clinical immunology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Ioanna A RotaDepartment of Paediatrics and the MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-2093-2986
Adam E HandelDepartment of Paediatrics and the MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0001-8385-6346
Stefano MaioDepartment of Paediatrics and the MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0001-9518-6466
Fabian KleinDepartment of Paediatrics and the MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-6208-8592
Fatima DhallaDepartment of Paediatrics and the MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0001-9244-2284
Mary E DeadmanDepartment of Paediatrics and the MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-6074-017X
Stanley CheukDepartment of Paediatrics and the MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-2759-3884
Joseph A NewmanStructural Genomics Consortium, University of Oxford, ORCRB, Roosevelt Drive, Oxford, UK.ORCID 0000-0003-4488-0516
Yale S MichaelsGenome Engineering and Synthetic Biology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-6857-5922
Saulius ZuklysPaediatric Immunology, Department of Biomedicine, University of Basel and University Children's Hospital Basel, Basel, Switzerland.
Nicolas PrevotDepartment of Paediatrics and the MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0001-5985-9758
Philip HublitzMRC Weatherall Institute of Molecular Medicine, Genome engineering services, Radcliffe Department of Medicine, University of Oxford, Oxford, UK.ORCID 0000-0001-8810-3247
Philip D CharlesTarget Discovery Institute, University of Oxford, Oxford OX3 7FZ, UK.ORCID 0000-0001-5278-5354
Athina Soragia GkaziGreat Ormond Street Hospital and Great Ormond Street Institute of Child Health, University College London, London WC1N 1EH, UK.ORCID 0000-0002-6385-368X
Eleni AdamopoulouDepartment of Paediatrics and the MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.
Waseem QasimGreat Ormond Street Hospital and Great Ormond Street Institute of Child Health, University College London, London WC1N 1EH, UK.ORCID 0000-0001-8353-4494
Edward Graham DaviesGreat Ormond Street Hospital and Great Ormond Street Institute of Child Health, University College London, London WC1N 1EH, UK.
Imelda HansonDepartment of Pediatrics, Section of Pediatric Immunology, Allergy, and Retrovirology, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0001-9457-0757
Alistair T PagnamentaNational Institute for Health Research Biomedical Research Centre, Oxford, UK.ORCID 0000-0001-7334-0602
Carme CampsNational Institute for Health Research Biomedical Research Centre, Oxford, UK.ORCID 0000-0003-0756-5752
Helene M DreauDepartment of Oncology, University of Oxford, Oxford OX3 7DQ, UK.ORCID 0000-0002-2532-4162
Andrea WhiteInstitute for Immunology and Immunotherapy, Medical School, University of Birmingham, Birmingham B15 2TT, UK.
Kieran JamesInstitute for Immunology and Immunotherapy, Medical School, University of Birmingham, Birmingham B15 2TT, UK.ORCID 0000-0001-8811-6996
Roman FischerTarget Discovery Institute, University of Oxford, Oxford OX3 7FZ, UK.ORCID 0000-0002-9715-5951
Opher GileadiStructural Genomics Consortium, University of Oxford, ORCRB, Roosevelt Drive, Oxford, UK.ORCID 0000-0001-6886-898X
Jenny C TaylorNational Institute for Health Research Biomedical Research Centre, Oxford, UK.ORCID 0000-0003-3602-5704
Tudor FulgaGenome Engineering and Synthetic Biology Unit, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-1056-0082
B Christoffer LagerholmWolfson Imaging Centre Oxford, MRC Weatherall Institute of Molecular Medicine, University of Oxford, Headley Way, Oxford OX3 9DS, UK.
Graham AndersonInstitute for Immunology and Immunotherapy, Medical School, University of Birmingham, Birmingham B15 2TT, UK.
Erdinc SezginPaediatric Immunology, Department of Biomedicine, University of Basel and University Children's Hospital Basel, Basel, Switzerland.ORCID 0000-0002-4915-388X
Georg A HolländerDepartment of Paediatrics and the MRC Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-8790-0874

Funding

Medical Research Council MR/T029765/1
6 · The paper itself

Abstract

The transcription factor FOXN1 is a master regulator of thymic epithelial cell (TEC) development and function. Here, we demonstrate that FOXN1 expression is differentially regulated during organogenesis and participates in multimolecular nuclear condensates essential for the factor’s transcriptional activity. FOXN1’s C-terminal sequence regulates the diffusion velocity within these aggregates and modulates the binding to proximal gene regulatory regions. These dynamics are altered in a patient with a mutant FOXN1 that is modified in its C-terminal sequence. This mutant is transcriptionally inactive and acts as a dominant negative factor displacing wild-type FOXN1 from condensates and causing athymia and severe lymphopenia in heterozygotes. Expression of the mutated mouse ortholog selectively impairs mouse TEC differentiation, revealing a gene dose dependency for individual TEC subtypes. We have therefore identified the cause for a primary immunodeficiency disease and determined the mechanism by which this FOXN1 gain-of-function mutant mediates its dominant negative effect.

Identifiers

PMID34860543
PMCPMC8641933

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.