Evidence map›Paper›PMID 34857921›Full record

ArticleNature biomedical engineering2021

Nuclear deformation guides chromatin reorganization in cardiac development and disease.

Benjamin Seelbinder, Soham Ghosh, Stephanie E Schneider, Adrienne K Scott, Alycia G Berman, Craig J Goergen, Kenneth B Margulies, Kenneth C Bedi, Eduard Casas, Alison R Swearingen and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature biomedical engineering, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
8.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 129 citations in OpenAlex.

  1. Review
  2. Mechanical regulation of cell memory.Nature structural & molecular biology · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Mechanoepigenetics in musculoskeletal disease.Osteoarthritis and cartilage · 2026
    Review
  12. Review
  13. Review
  14. Article
  15. DNA damage and repair in cardiomyopathy: mechanisms and therapeutic opportunities.American journal of physiology. Heart and circulatory physiology · 2026
    Review
  16. Review
  17. Stress transmission towards the nucleus of the cell.Frontiers in cell and developmental biology · 2026
    Review
  18. Article
  19. Mechanical Stress Triggers Premature Senescence in Cardiac Fibroblasts.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Benjamin SeelbinderPaul M. Rady Department of Mechanical Engineering, University of Colorado Boulder, Boulder, CO, USA.
Soham GhoshPaul M. Rady Department of Mechanical Engineering, University of Colorado Boulder, Boulder, CO, USA.
Stephanie E SchneiderPaul M. Rady Department of Mechanical Engineering, University of Colorado Boulder, Boulder, CO, USA.
Adrienne K ScottPaul M. Rady Department of Mechanical Engineering, University of Colorado Boulder, Boulder, CO, USA.
Alycia G BermanWeldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, USA.ORCID http://orcid.org/0000-0001-9182-4037
Craig J GoergenWeldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, USA.ORCID http://orcid.org/0000-0001-8883-7953
Kenneth B MarguliesCardiovascular Institute, University of Pennsylvania, Philadelphia, PA, USA.
Kenneth C BediCardiovascular Institute, University of Pennsylvania, Philadelphia, PA, USA.
Eduard CasasDepartment of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA.
Alison R SwearingenDepartment of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA.
Justin BrumbaughDepartment of Molecular, Cellular and Developmental Biology, University of Colorado Boulder, Boulder, CO, USA.
Sarah CalvePaul M. Rady Department of Mechanical Engineering, University of Colorado Boulder, Boulder, CO, USA.ORCID http://orcid.org/0000-0002-7887-6307
Corey P NeuPaul M. Rady Department of Mechanical Engineering, University of Colorado Boulder, Boulder, CO, USA. cpneu@colorado.edu.ORCID http://orcid.org/0000-0002-8256-5683
University of Colorado Boulder · USCardiovascular Institute of the South · USPurdue University West Lafayette · US

Funding

Probing Osteoarthritis Pathogenesis by Noninvasive Imaging of Cartilage StrainR01AR063712 · NIAMS · UNIVERSITY OF COLORADO · PI NEU, COREY P · 2013 to 2023
$4.7M
Predoctoral Training Molecular BiophysicsT32GM065103 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI FALKE, JOSEPH J · 2002 to 2021
$4.3M
DEFINING REGULATORY ROLES FOR HISTONE H3 METHYLATION IN DEVELOPMENTR35GM142884 · NIGMS · UNIVERSITY OF COLORADO · PI BRUMBAUGH, JUSTIN · 2021 to 2025
$2.1M
Biomechanics of Human Articular Cartilage Measured In VivoR21AR066230 · NIAMS · PURDUE UNIVERSITY · PI NEU, COREY P · 2014 to 2015
$357k
NIAMS NIH HHS R01 AR063712NIAMS NIH HHS R21 AR066230NIGMS NIH HHS R35 GM142884NIGMS NIH HHS T32 GM065103
6 · The paper itself

Abstract

In cardiovascular tissues, changes in the mechanical properties of the extracellular matrix are associated with cellular de-differentiation and with subsequent functional declines. However, the underlying mechanoreceptive mechanisms are largely unclear. Here, by generating high-resolution, full-field strain maps of cardiomyocyte nuclei during contraction in vitro, complemented with evidence from tissues from patients with cardiomyopathy and from mice with reduced cardiac performance, we show that cardiomyocytes establish a distinct nuclear organization during maturation, characterized by the reorganization of H3K9me3-marked chromatin towards the nuclear border. Specifically, we show that intranuclear tension is spatially correlated with H3K9me3-marked chromatin, that reductions in nuclear deformation (through environmental stiffening or through the disruption of complexes of the linker of nucleoskeleton and cytoskeleton) abrogate chromatin reorganization and lead to the dissociation of H3K9me3-marked chromatin from the nuclear periphery, and that the suppression of H3K9 methylation induces chromatin reorganization and reduces the expression of cardiac developmental genes. Overall, our findings indicate that, by integrating environmental mechanical cues, the nuclei of cardiomyocytes guide and stabilize the fate of cells through the reorganization of epigenetically marked chromatin.

Indexed as

Cell NucleusChromatinAnimalsCytoskeletonHumansMiceMyocytes, CardiacChromatin

Identifiers

PMID34857921
PMCPMC9300284
OpenAlexW3214741807

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.