Evidence map›Paper›PMID 34857786›Full record

ArticleScientific reports2021

Integrative epigenomics in Sjögren´s syndrome reveals novel pathways and a strong interaction between the HLA, autoantibodies and the interferon signature.

María Teruel, Guillermo Barturen, Manuel Martínez-Bueno, Olivia Castellini-Pérez, Miguel Barroso-Gil, Elena Povedano, Martin Kerick, Francesc Català-Moll, Zuzanna Makowska, Anne Buttgereit and 8 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
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  14. Metformin-induced activation of CaJournal of translational autoimmunity · 2023
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  16. A basket genetic trial of the vasculitides.Nature reviews. Rheumatology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 20 institutions in 13 countries.

María TeruelGENYO, Center for Genomics and Oncological Research Pfizer/University of Granada/Andalusian Regional Government, 18016, Granada, Spain.
Guillermo BarturenGENYO, Center for Genomics and Oncological Research Pfizer/University of Granada/Andalusian Regional Government, 18016, Granada, Spain.
Manuel Martínez-BuenoGENYO, Center for Genomics and Oncological Research Pfizer/University of Granada/Andalusian Regional Government, 18016, Granada, Spain.
Olivia Castellini-PérezGENYO, Center for Genomics and Oncological Research Pfizer/University of Granada/Andalusian Regional Government, 18016, Granada, Spain.
Miguel Barroso-GilGENYO, Center for Genomics and Oncological Research Pfizer/University of Granada/Andalusian Regional Government, 18016, Granada, Spain.
Elena PovedanoGENYO, Center for Genomics and Oncological Research Pfizer/University of Granada/Andalusian Regional Government, 18016, Granada, Spain.
Martin KerickIPBLN-CSIC, Instituto de Parasitología y Biomedicina López-Neyra, Consejo Superior de Investigaciones Científicas, 18016, Granada, Spain.
Francesc Català-MollEpigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC), 08916, Badalona, Barcelona, Spain.
Zuzanna MakowskaPharmaceuticals Division, Bayer Pharma Aktiengesellschaft, Berlin, Germany.
Anne ButtgereitPharmaceuticals Division, Bayer Pharma Aktiengesellschaft, Berlin, Germany.
PRECISESADS Clinical Consortium
PRECISESADS Flow Cytometry Study Group
Jacques-Olivier PersUniversité de Brest, INSERM, Labex IGO, CHU de Brest, Brest, France.
Concepción MarañónGENYO, Center for Genomics and Oncological Research Pfizer/University of Granada/Andalusian Regional Government, 18016, Granada, Spain.
Esteban BallestarEpigenetics and Immune Disease Group, Josep Carreras Research Institute (IJC), 08916, Badalona, Barcelona, Spain.
Javier MartinIPBLN-CSIC, Instituto de Parasitología y Biomedicina López-Neyra, Consejo Superior de Investigaciones Científicas, 18016, Granada, Spain.
Elena Carnero-Montoro *GENYO, Center for Genomics and Oncological Research Pfizer/University of Granada/Andalusian Regional Government, 18016, Granada, Spain. elena.carnero@genyo.es.
Marta E Alarcón-Riquelme *GENYO, Center for Genomics and Oncological Research Pfizer/University of Granada/Andalusian Regional Government, 18016, Granada, Spain. marta.alarcon@genyo.es.
Andalusian Health Service · ESPfizer-University of Granada-Junta de Andalucía Centre for Genomics and Oncological Research · ESUniversity of Szeged · HUUniversity of Milan · ITCentre Hospitalier Régional Universitaire de Brest · FRCentro Hospitalar do Porto · PTFondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico · ITMarqués de Valdecilla University Hospital · ESMedizinische Hochschule Hannover · DECharité - Universitätsmedizin Berlin · DEInstitut d'Investigació Biomédica de Bellvitge · ESConsejo Superior de Investigaciones Científicas · ESInstituto Maimónides de Investigación Biomédica de Córdoba · ESUniversity Hospital of Geneva · CHAndalusian School of Public Health · ESAutoimmune Technologies (United States) · USBayer (Switzerland) · CHInserm · FRUniversidad de Granada · ESUniversité de Bretagne Occidentale · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Primary Sjögren's syndrome (SS) is a systemic autoimmune disease characterized by lymphocytic infiltration and damage of exocrine salivary and lacrimal glands. The etiology of SS is complex with environmental triggers and genetic factors involved. By conducting an integrated multi-omics study, we confirmed a vast coordinated hypomethylation and overexpression effects in IFN-related genes, what is known as the IFN signature. Stratified and conditional analyses suggest a strong interaction between SS-associated HLA genetic variation and the presence of Anti-Ro/SSA autoantibodies in driving the IFN epigenetic signature and determining SS. We report a novel epigenetic signature characterized by increased DNA methylation levels in a large number of genes enriched in pathways such as collagen metabolism and extracellular matrix organization. We identified potential new genetic variants associated with SS that might mediate their risk by altering DNA methylation or gene expression patterns, as well as disease-interacting genetic variants that exhibit regulatory function only in the SS population. Our study sheds new light on the interaction between genetics, autoantibody profiles, DNA methylation and gene expression in SS, and contributes to elucidate the genetic architecture of gene regulation in an autoimmune population.

Indexed as

AutoantibodiesEpigenomicsGenetic VariationDNA MethylationFemaleGene ExpressionGene Expression RegulationHLA AntigensHumansInterferonsMaleSjogren's SyndromeAutoantibodiesHLA AntigensInterferons

Identifiers

PMID34857786
PMCPMC8640069
OpenAlexW3216224296

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.