Evidence map›Paper›PMID 34857772›Full record

ArticleNature communications2021

Mapping the serum proteome to neurological diseases using whole genome sequencing.

Grace Png, Andrei Barysenka, Linda Repetto, Pau Navarro, Xia Shen, Maik Pietzner, Eleanor Wheeler, Nicholas J Wareham, Claudia Langenberg, Emmanouil Tsafantakis and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 2 pooled it
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 2 syntheses or guidelines pooled it, 55 citations in OpenAlex.

  1. Pooled it
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  10. Multi-omics characterization of type 2 diabetes associated genetic variation.medRxiv : the preprint server for health sciences · 2024
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  20. Genetic mechanisms of 184 neuro-related proteins in human plasma.medRxiv : the preprint server for health sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 9 institutions in 6 countries.

Grace PngInstitute of Translational Genomics, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany. grace.png@helmholtz-muenchen.de.ORCID http://orcid.org/0000-0003-3962-7436
Andrei BarysenkaInstitute of Translational Genomics, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.
Linda RepettoCentre for Global Health Research, Usher Institute, University of Edinburgh, Edinburgh, UK.
Pau NavarroMRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0001-5576-8584
Xia ShenCentre for Global Health Research, Usher Institute, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0003-4390-1979
Maik PietznerMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0003-3437-9963
Eleanor WheelerMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-8616-6444
Nicholas J WarehamMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0003-1422-2993
Claudia LangenbergMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-5017-7344
Emmanouil TsafantakisAnogia Medical Centre, Anogia, Greece.
Maria KaraleftheriEchinos Medical Centre, Echinos, Greece.
George DedoussisDepartment of Nutrition and Dietetics, School of Health Science and Education, Harokopio University of Athens, Athens, Greece.
Anders MälarstigDepartment of Medicine, Karolinska Institute, Solna, Sweden.ORCID http://orcid.org/0000-0003-2608-1358
James F WilsonCentre for Global Health Research, Usher Institute, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0001-5751-9178
Arthur GillyInstitute of Translational Genomics, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.
Eleftheria ZegginiInstitute of Translational Genomics, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany. eleftheria.zeggini@helmholtz-muenchen.de.ORCID http://orcid.org/0000-0003-4238-659X
University of Cambridge · GBHelmholtz Zentrum München · DEInstitute of Genetics and Cancer · GBTUM Klinikum · DEAthens Medical Center · GRFudan University · CNHarokopio University of Athens · GRPfizer (United States) · USUniversity of Edinburgh · GB

Funding

Medical Research Council MC_PC_13046Medical Research Council MC_PC_U127592696Medical Research Council MC_UU_00007/10Medical Research Council MC_UU_12015/1Medical Research Council U. MC_UU_00007/10Wellcome TrustWellcome Trust 098051
6 · The paper itself

Abstract

Despite the increasing global burden of neurological disorders, there is a lack of effective diagnostic and therapeutic biomarkers. Proteins are often dysregulated in disease and have a strong genetic component. Here, we carry out a protein quantitative trait locus analysis of 184 neurologically-relevant proteins, using whole genome sequencing data from two isolated population-based cohorts (N = 2893). In doing so, we elucidate the genetic landscape of the circulating proteome and its connection to neurological disorders. We detect 214 independently-associated variants for 107 proteins, the majority of which (76%) are cis-acting, including 114 variants that have not been previously identified. Using two-sample Mendelian randomisation, we identify causal associations between serum CD33 and Alzheimer's disease, GPNMB and Parkinson's disease, and MSR1 and schizophrenia, describing their clinical potential and highlighting drug repurposing opportunities.

Indexed as

Alzheimer DiseaseBiomarkersCohort StudiesGene ExpressionGene OntologyGenetic Predisposition to DiseaseGenome, HumanHumansMembrane GlycoproteinsMendelian Randomization AnalysisMolecular Sequence AnnotationParkinson DiseaseProteomeQuantitative Trait LociScavenger Receptors, Class ASchizophreniaBiomarkersCD33 protein, humanGPNMB protein, humanMembrane GlycoproteinsMSR1 protein, humanProteomeScavenger Receptors, Class ASialic Acid Binding Ig-like Lectin 3

Identifiers

PMID34857772
PMCPMC8640022
OpenAlexW3217370940

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.