Evidence map›Paper›PMID 34857749›Full record

ArticleNature communications2021

Conformational changes in Lassa virus L protein associated with promoter binding and RNA synthesis activity.

Tomas Kouba, Dominik Vogel, Sigurdur R Thorkelsson, Emmanuelle R J Quemin, Harry M Williams, Morlin Milewski, Carola Busch, Stephan Günther, Kay Grünewald, Maria Rosenthal and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Tomas Kouba *European Molecular Biology Laboratory, Grenoble, France.ORCID 0000-0001-8173-6930
Dominik Vogel *Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.ORCID 0000-0001-6797-9696
Sigurdur R Thorkelsson *Centre for Structural Systems Biology, Leibniz Institute for Experimental Virology, University of Hamburg, Hamburg, Germany.ORCID 0000-0002-9421-9788
Emmanuelle R J QueminCentre for Structural Systems Biology, Leibniz Institute for Experimental Virology, University of Hamburg, Hamburg, Germany.ORCID 0000-0003-2919-3275
Harry M WilliamsBernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.ORCID 0000-0001-9108-9933
Morlin MilewskiBernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.ORCID 0000-0002-0164-4292
Carola BuschBernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.
Stephan GüntherBernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.ORCID 0000-0002-6562-0230
Kay GrünewaldCentre for Structural Systems Biology, Leibniz Institute for Experimental Virology, University of Hamburg, Hamburg, Germany.ORCID 0000-0002-4788-2691
Maria RosenthalBernhard Nocht Institute for Tropical Medicine, Hamburg, Germany. rosenthal@bnitm.de.ORCID 0000-0003-2986-936X
Stephen CusackEuropean Molecular Biology Laboratory, Grenoble, France. cusack@embl.fr.ORCID 0000-0002-9324-0796

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lassa virus is endemic in West Africa and can cause severe hemorrhagic fever. The viral L protein transcribes and replicates the RNA genome via its RNA-dependent RNA polymerase activity. Here, we present nine cryo-EM structures of the L protein in the apo-, promoter-bound pre-initiation and active RNA synthesis states. We characterize distinct binding pockets for the conserved 3' and 5' promoter RNAs and show how full-promoter binding induces a distinct pre-initiation conformation. In the apo- and early elongation states, the endonuclease is inhibited by two distinct L protein peptides, whereas in the pre-initiation state it is uninhibited. In the early elongation state, a template-product duplex is bound in the active site cavity together with an incoming non-hydrolysable nucleotide and the full C-terminal region of the L protein, including the putative cap-binding domain, is well-ordered. These data advance our mechanistic understanding of how this flexible and multifunctional molecular machine is activated.

Indexed as

Transcription, GeneticAmino Acid MotifsCatalytic DomainCloning, MolecularEscherichia coliGene ExpressionGenetic VectorsLassa virusModels, MolecularPromoter Regions, GeneticProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and MotifsRecombinant ProteinsRNA-Dependent RNA PolymeraseRecombinant ProteinsRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins

Identifiers

PMID34857749
PMCPMC8639829

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.