Evidence map›Paper›PMID 34857745›Full record

ArticleNature communications2021

Light-mediated discovery of surfaceome nanoscale organization and intercellular receptor interaction networks.

Maik Müller, Fabienne Gräbnitz, Niculò Barandun, Yang Shen, Fabian Wendt, Sebastian N Steiner, Yannik Severin, Stefan U Vetterli, Milon Mondal, James R Prudent and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 88 citations in OpenAlex.

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  6. AbioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 2 countries.

Maik MüllerDepartment of Health Sciences and Technology (D-HEST), ETH Zurich, Institute of Translational Medicine (ITM), Zurich, Switzerland.ORCID http://orcid.org/0000-0002-9127-5733
Fabienne GräbnitzDepartment of Biology, ETH Zurich, Institute of Microbiology, Zurich, Switzerland.
Niculò BarandunDepartment of Biology, ETH Zurich, Institute of Microbiology, Zurich, Switzerland.
Yang ShenInstitute of Food Nutrition and Health, Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-4278-1477
Fabian WendtDepartment of Health Sciences and Technology (D-HEST), ETH Zurich, Institute of Translational Medicine (ITM), Zurich, Switzerland.ORCID http://orcid.org/0000-0002-2501-536X
Sebastian N SteinerDepartment of Health Sciences and Technology (D-HEST), ETH Zurich, Institute of Translational Medicine (ITM), Zurich, Switzerland.ORCID http://orcid.org/0000-0002-1281-8403
Yannik SeverinInstitute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-4482-6237
Stefan U VetterliChemistry Department, University of Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-8171-9687
Milon MondalChemistry Department, University of Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-1613-7269
James R PrudentCentrose LLC, Madison, WI, USA.ORCID http://orcid.org/0000-0002-8948-1781
Raphael HofmannLaboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-9769-6555
Marc van OostrumDepartment of Health Sciences and Technology (D-HEST), ETH Zurich, Institute of Translational Medicine (ITM), Zurich, Switzerland.ORCID http://orcid.org/0000-0001-8747-9787
Roman C SarottLaboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-8789-6150
Alexey I NesvizhskiiDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-2806-7819
Erick M CarreiraLaboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0003-1472-490X
Jeffrey W BodeLaboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-8394-8910
Berend SnijderSwiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.ORCID http://orcid.org/0000-0003-3386-6583
John A RobinsonChemistry Department, University of Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0001-7857-8556
Martin J LoessnerInstitute of Food Nutrition and Health, Department of Health Sciences and Technology, ETH Zurich, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-8162-2631
Annette OxeniusDepartment of Biology, ETH Zurich, Institute of Microbiology, Zurich, Switzerland.ORCID http://orcid.org/0000-0002-2079-2354
Bernd WollscheidDepartment of Health Sciences and Technology (D-HEST), ETH Zurich, Institute of Translational Medicine (ITM), Zurich, Switzerland. wbernd@ethz.ch.ORCID http://orcid.org/0000-0002-3923-1610
ETH Zurich · CHSIB Swiss Institute of Bioinformatics · CHUniversity of Zurich · CHCentrose (United States) · USUniversity of Michigan · US

Funding

COMPUTATIONAL TOOLS FOR MASS SPECTROMETRY-BASED INTERACTOME DATAR01GM094231 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 2010 to 2026
$5.4M
University of Michigan Proteogenomics Data Analysis CenterU24CA210967 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHINNAIYAN, ARUL M, DHANASEKARAN, SARAVANA M · 2016 to 2020
$4.1M
NCI NIH HHS U24 CA210967NIGMS NIH HHS R01 GM094231
6 · The paper itself

Abstract

The molecular nanoscale organization of the surfaceome is a fundamental regulator of cellular signaling in health and disease. Technologies for mapping the spatial relationships of cell surface receptors and their extracellular signaling synapses would unlock theranostic opportunities to target protein communities and the possibility to engineer extracellular signaling. Here, we develop an optoproteomic technology termed LUX-MS that enables the targeted elucidation of acute protein interactions on and in between living cells using light-controlled singlet oxygen generators (SOG). By using SOG-coupled antibodies, small molecule drugs, biologics and intact viral particles, we demonstrate the ability of LUX-MS to decode ligand receptor interactions across organisms and to discover surfaceome receptor nanoscale organization with direct implications for drug action. Furthermore, by coupling SOG to antigens we achieved light-controlled molecular mapping of intercellular signaling within functional immune synapses between antigen-presenting cells and CD8

Indexed as

AntibodiesAntigen-Presenting CellsBiological ProductsB-LymphocytesCD8-Positive T-LymphocytesCell CommunicationCell Line, TumorChromatography, LiquidGene ExpressionHL-60 CellsHumansImmunological SynapsesLigandsLightLymphocyte ActivationOptogeneticsAntibodiesBiological ProductsLigandsReceptors, Cell SurfaceSinglet OxygenSmall Molecule Libraries

Identifiers

PMID34857745
PMCPMC8639842
OpenAlexW3215115507

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.