Evidence map›Paper›PMID 34857637›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Accelerating strain phenotyping with desorption electrospray ionization-imaging mass spectrometry and untargeted analysis of intact microbial colonies.

Berkley M Ellis, Piyoosh K Babele, Jody C May, Carl H Johnson, Brian F Pfleger, Jamey D Young, John A McLean

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Berkley M EllisDepartment of Chemistry, Vanderbilt University, Nashville, TN 37235.ORCID 0000-0002-2581-9034
Piyoosh K BabeleDepartment of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, TN 37235.ORCID 0000-0003-4280-8465
Jody C MayDepartment of Chemistry, Vanderbilt University, Nashville, TN 37235.ORCID 0000-0003-4871-5024
Carl H JohnsonDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN 37232.ORCID 0000-0003-2878-3193
Brian F PflegerDepartment of Chemical and Biological Engineering, University of Wisconsin, Madison, WI 53706.ORCID 0000-0002-9232-9959
Jamey D YoungDepartment of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, TN 37235.ORCID 0000-0002-0871-1494
John A McLeanDepartment of Chemistry, Vanderbilt University, Nashville, TN 37235; john.a.mclean@vanderbilt.edu.ORCID 0000-0001-8918-6419

Funding

Circadian Programs in BacteriaR37GM067152 · NIGMS · VANDERBILT UNIVERSITY · PI JOHNSON, CARL HIRSCHIE · 2015 to 2024
$4.1M
Regulation and Significance of Sustained Circadian OscillationsR01GM107434 · NIGMS · VANDERBILT UNIVERSITY · PI JOHNSON, CARL HIRSCHIE · 2013 to 2024
$4.0M
Circadian Programs in BacteriaR01GM067152 · NIGMS · VANDERBILT UNIVERSITY · PI JOHNSON, CARL HIRSCHIE · 2003 to 2014
$3.9M
New Methodologies for Accelerating Natural Product DiscoveryR01GM092218 · NIGMS · VANDERBILT UNIVERSITY · PI BACHMANN, BRIAN O, MCLEAN, JOHN ALAN · 2010 to 2018
$2.8M
Ion mobility based informatics and visualization strategies in support of metabolomicsR03CA222452 · NCI · VANDERBILT UNIVERSITY · PI MCLEAN, JOHN ALAN · 2017 to 2017
$152k
Ecological determinants of natural product synthesis in cave myxobacteriaF32GM128344 · NIGMS · VANDERBILT UNIVERSITY · PI FISCHER, CALEB NATHANIEL · 2018 to 2019
$120k
NCI NIH HHS R03 CA222452NIGMS NIH HHS F32 GM128344NIGMS NIH HHS R01 GM067152NIGMS NIH HHS R01 GM092218NIGMS NIH HHS R01 GM107434NIGMS NIH HHS R37 GM067152
6 · The paper itself

Abstract

Reading and writing DNA were once the rate-limiting step in synthetic biology workflows. This has been replaced by the search for the optimal target sequences to produce systems with desired properties. Directed evolution and screening mutant libraries are proven technologies for isolating strains with enhanced performance whenever specialized assays are available for rapidly detecting a phenotype of interest. Armed with technologies such as CRISPR-Cas9, these experiments are capable of generating libraries of up to 10

Indexed as

Biological Variation, PopulationFatty AcidsMetabolomicsMicrobiotaSpectrometry, Mass, Electrospray IonizationSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationSynthetic BiologyFatty AcidsDESI-IMSfree fatty acid profilingimaging mass spectrometrymultiplexed metabolomicssynthetic biology

Identifiers

PMID34857637
PMCPMC8670462

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.