Evidence map›Paper›PMID 34855896›Full record

ArticlePloS one2021

Comparison of TCF4 repeat expansion length in corneal endothelium and leukocytes of patients with Fuchs endothelial corneal dystrophy.

Eric D Wieben, Ross A Aleff, Tommy A Rinkoski, Keith H Baratz, Shubham Basu, Sanjay V Patel, Leo J Maguire, Michael P Fautsch

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Eric D WiebenDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, United states of America.
Ross A AleffDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, United states of America.
Tommy A RinkoskiDepartment of Ophthalmology, Mayo Clinic, Rochester, Minnesota, United states of America.
Keith H BaratzDepartment of Ophthalmology, Mayo Clinic, Rochester, Minnesota, United states of America.
Shubham BasuDivision of Biostatistics and Bioinformatics and Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, United States of America.
Sanjay V PatelDepartment of Ophthalmology, Mayo Clinic, Rochester, Minnesota, United states of America.ORCID 0000-0001-6694-1530
Leo J MaguireDepartment of Ophthalmology, Mayo Clinic, Rochester, Minnesota, United states of America.
Michael P FautschDepartment of Ophthalmology, Mayo Clinic, Rochester, Minnesota, United states of America.ORCID 0000-0002-9115-2485
Mayo Clinic · US

Funding

Pathogenesis of age-related Fuchs Endothelial Corneal DystrophyR01EY026490 · NEI · MAYO CLINIC ROCHESTER · PI FAUTSCH, MICHAEL P., GOTTESFELD, JOEL M. · 2016 to 2019
$2.0M
NEI NIH HHS R01 EY026490
6 · The paper itself

Abstract

Expansion of CTG trinucleotide repeats (TNR) in the transcription factor 4 (TCF4) gene is highly associated with Fuchs Endothelial Corneal Dystrophy (FECD). Due to limitations in the availability of DNA from diseased corneal endothelium, sizing of CTG repeats in FECD patients has typically been determined using DNA samples isolated from peripheral blood leukocytes. However, it is non-feasible to extract enough DNA from surgically isolated FECD corneal endothelial tissue to determine repeat length based on current technology. To circumvent this issue, total RNA was isolated from FECD corneal endothelium and sequenced using long-read sequencing. Southern blotting of DNA samples isolated from primary cultures of corneal endothelium from these same affected individuals was also assessed. Both long read sequencing and Southern blot analysis showed significantly longer CTG TNR expansion (>1000 repeats) in the corneal endothelium from FECD patients than those characterized in leukocytes from the same individuals (<90 repeats). Our findings suggest that the TCF4 CTG repeat expansions in the FECD corneal endothelium are much longer than those found in leukocytes.

Indexed as

Trinucleotide Repeat ExpansionAgedAged, 80 and overBlotting, SouthernChildDNAEndothelium, CornealFemaleFuchs' Endothelial DystrophyGenetic Predisposition to DiseaseGenotypeHumansLeukocytesMaleMiddle AgedPolymerase Chain ReactionDNATCF4 protein, humanTranscription Factor 4

Identifiers

PMID34855896
PMCPMC8638873
OpenAlexW3215248284

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.