Evidence map›Paper›PMID 34853071›Full record

ArticleCancer research2022

Prostate Cancer Risk Stratification via Nondestructive 3D Pathology with Deep Learning-Assisted Gland Analysis.

Weisi Xie, Nicholas P Reder, Can Koyuncu, Patrick Leo, Sarah Hawley, Hongyi Huang, Chenyi Mao, Nadia Postupna, Soyoung Kang, Robert Serafin and 13 more

Open access · hybridAbstract read
In one paragraph

Article in Cancer research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 98 citations in OpenAlex.

  1. Article
  2. Article
  3. Assessing the Effects of a 3-Dimensional (3D) Pathology Tissue-Processing Workflow on Downstream Molecular Analyses.Laboratory investigation; a journal of technical methods and pathology · 2026
    Article
  4. Prototype-based AI triage for 3D pathology.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Review
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  8. Article
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  10. Review
  11. Biomechanics-Driven 3D Architecture Inference from Histology Using CellSqueeze3D.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  12. Review
  13. Article
  14. Article
  15. Review
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  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 4 institutions in 2 countries.

Weisi XieDepartment of Mechanical Engineering, University of Washington, Seattle, Washington.ORCID 0000-0002-2576-9583
Nicholas P RederDepartment of Mechanical Engineering, University of Washington, Seattle, Washington.
Can KoyuncuDepartment of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio.ORCID 0000-0001-5990-2226
Patrick LeoDepartment of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio.
Sarah HawleyCanary Foundation, Palo Alto, California.
Hongyi HuangDepartment of Mechanical Engineering, University of Washington, Seattle, Washington.
Chenyi MaoDepartment of Chemistry, University of Washington, Seattle, Washington.
Nadia PostupnaDepartment of Laboratory Medicine & Pathology, University of Washington, Seattle, Washington.ORCID 0000-0002-4939-4915
Soyoung KangDepartment of Mechanical Engineering, University of Washington, Seattle, Washington.
Robert SerafinDepartment of Mechanical Engineering, University of Washington, Seattle, Washington.
Gan GaoDepartment of Mechanical Engineering, University of Washington, Seattle, Washington.
Qinghua HanDepartment of Bioengineering, University of Washington, Seattle, Washington.
Kevin W BishopDepartment of Mechanical Engineering, University of Washington, Seattle, Washington.ORCID 0000-0001-8722-6464
Lindsey A BarnerDepartment of Mechanical Engineering, University of Washington, Seattle, Washington.
Pingfu FuDepartment of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, Ohio.
Jonathan L WrightDepartment of Urology, University of Washington, Seattle, Washington.
C Dirk KeeneDepartment of Laboratory Medicine & Pathology, University of Washington, Seattle, Washington.
Joshua C VaughanDepartment of Chemistry, University of Washington, Seattle, Washington.
Andrew JanowczykDepartment of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio.ORCID 0000-0003-2982-4321
Adam K GlaserDepartment of Mechanical Engineering, University of Washington, Seattle, Washington.
Anant MadabhushiDepartment of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio.ORCID 0000-0002-5741-0399
Lawrence D TrueDepartment of Laboratory Medicine & Pathology, University of Washington, Seattle, Washington.
Jonathan T C LiuDepartment of Mechanical Engineering, University of Washington, Seattle, Washington. jonliu@uw.edu.ORCID 0000-0001-5650-3086
University of Washington · USCase Western Reserve University · USEast Palo Alto Kids Foundation · USLouis Stokes Cleveland VA Medical Center · US

Funding

NRSA Training CoreTL1TR002318 · NCATS · UNIVERSITY OF WASHINGTON · PI Megan Moore · 2017 to 2026
$8.4M
Pathology CoreU54CA254566 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MADABHUSHI, ANANT · 2020 to 2024
$5.0M
Spatially Resolved Transcriptomics Enabled by Ultrabright Pdot Probes for Interrogation of Complex TissuesR01MH115767 · NIMH · UNIVERSITY OF WASHINGTON · PI CHIU, DANIEL T, VAUGHAN, JOSHUA · 2017 to 2021
$3.7M
Computer-Assisted Histologic Evaluation of Cardiac Allograft RejectionR01HL151277 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI MADABHUSHI, ANANT, MARGULIES, KENNETH BER · 2020 to 2023
$3.2M
Oral Cavity Quantitative Histomorphometric Risk Classifier (OHbIC) in Oral Cavity Squamous Cell Carcinoma (OC-SCC)R01CA249992 · NCI · EMORY UNIVERSITY · PI LEWIS, JAMES, MADABHUSHI, ANANT · 2021 to 2025
$3.2M
Computerized histologic image predictor of cancer outcomeR01CA202752 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI FELDMAN, MICHAEL D, GANESAN, SHRIDAR · 2016 to 2020
$3.1M
Quantitative Histomorphometric Risk Classifier (QuHbIC) in HPV + Oropharyngeal CarcinomaR01CA220581 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI KOYFMAN, SHLOMO, LEWIS, JAMES · 2018 to 2023
$3.1M
Computerized Histologic Risk Predictor (CHiRP) for Early Stage Lung CancersR01CA216579 · NCI · EMORY UNIVERSITY · PI FU, PINGFU, LLOYD, MARK · 2018 to 2023
$3.1M
MR Fingerprinting and Computerized Decision Support for Prostate CancerR01CA208236 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GULANI, VIKAS, PONSKY, LEE EVAN · 2017 to 2022
$3.0M
Pathology Image Informatics Platform for visualization, analysis and managementU24CA199374 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI GURCAN, METIN NAFI, MADABHUSHI, ANANT · 2015 to 2019
$2.9M
In vivo dual-axis confocal microscopy of 5-ALA-induced PpIX to guide low-grade glioma resectionsR01CA244170 · NCI · UNIVERSITY OF WASHINGTON · PI LIU, JONATHAN T.C., SANAI, NADER · 2020 to 2024
$2.8M
Novel Radiomics for Predicting Response to Immunotherapy for Lung CancerR01CA257612 · NCI · EMORY UNIVERSITY · PI Anant Madabhushi, Vamsidhar Velcheti · 2021 to 2026
$2.7M
BLRD VA I01 BX004121NCATS NIH HHS TL1 TR002318NCI NIH HHS K99 CA240681NCI NIH HHS R00 CA240681NCI NIH HHS R01 CA202752NCI NIH HHS R01 CA208236NCI NIH HHS R01 CA216579NCI NIH HHS R01 CA220581NCI NIH HHS R01 CA244170NCI NIH HHS R01 CA249992NCI NIH HHS R01 CA257612NCI NIH HHS U01 CA239055NCI NIH HHS U01 CA248226NCI NIH HHS U24 CA199374NCI NIH HHS U54 CA254566NHLBI NIH HHS R01 HL151277NIBIB NIH HHS R01 EB031002NIBIB NIH HHS R43 EB028736NIMH NIH HHS R01 MH115767
6 · The paper itself

Abstract

Prostate cancer treatment planning is largely dependent upon examination of core-needle biopsies. The microscopic architecture of the prostate glands forms the basis for prognostic grading by pathologists. Interpretation of these convoluted three-dimensional (3D) glandular structures via visual inspection of a limited number of two-dimensional (2D) histology sections is often unreliable, which contributes to the under- and overtreatment of patients. To improve risk assessment and treatment decisions, we have developed a workflow for nondestructive 3D pathology and computational analysis of whole prostate biopsies labeled with a rapid and inexpensive fluorescent analogue of standard hematoxylin and eosin (H&E) staining. This analysis is based on interpretable glandular features and is facilitated by the development of image translation-assisted segmentation in 3D (ITAS3D). ITAS3D is a generalizable deep learning-based strategy that enables tissue microstructures to be volumetrically segmented in an annotation-free and objective (biomarker-based) manner without requiring immunolabeling. As a preliminary demonstration of the translational value of a computational 3D versus a computational 2D pathology approach, we imaged 300

Indexed as

Deep LearningAgedBiopsy, Large-Core NeedleCohort StudiesHumansImaging, Three-DimensionalMaleMiddle AgedProstateProstatectomyProstatic NeoplasmsRisk AssessmentStaining and Labeling

Identifiers

PMID34853071
PMCPMC8803395
OpenAlexW3216310288

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.