Evidence map›Paper›PMID 34852327›Full record

ArticleJournal of breath research2021

Inactivation of SARS-CoV-2 in clinical exhaled breath condensate samples for metabolomic analysis.

Shuang Hu, Mitchell M McCartney, Juan Arredondo, Sumathi Sankaran-Walters, Eva Borras, Richart W Harper, Michael Schivo, Cristina E Davis, Nicholas J Kenyon, Satya Dandekar

Abstract read
In one paragraph

Article in Journal of breath research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Metabolic signatures of acute respiratory distress syndrome: COVID versus non-COVID.American journal of physiology. Lung cellular and molecular physiology · 2024
    Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Shuang HuDepartment of Medical Microbiology and Immunology, School of Medicine, University of California Davis, Davis, CA 95616, United States of America.ORCID 0000-0001-8822-7450
Mitchell M McCartneyMechanical and Aerospace Engineering, University of California Davis, Davis, CA 95616, United States of America.
Juan ArredondoDepartment of Medical Microbiology and Immunology, School of Medicine, University of California Davis, Davis, CA 95616, United States of America.
Sumathi Sankaran-WaltersDepartment of Medical Microbiology and Immunology, School of Medicine, University of California Davis, Davis, CA 95616, United States of America.
Eva BorrasMechanical and Aerospace Engineering, University of California Davis, Davis, CA 95616, United States of America.
Richart W HarperUC Davis Lung Center, Davis, CA 95616, United States of America.
Michael SchivoUC Davis Lung Center, Davis, CA 95616, United States of America.
Cristina E DavisMechanical and Aerospace Engineering, University of California Davis, Davis, CA 95616, United States of America.ORCID 0000-0002-9878-7758
Nicholas J KenyonUC Davis Lung Center, Davis, CA 95616, United States of America.
Satya DandekarDepartment of Medical Microbiology and Immunology, School of Medicine, University of California Davis, Davis, CA 95616, United States of America.ORCID 0000-0002-6346-8028

Funding

UC Davis Clinical and Translational Science CenterUL1TR001860 · NCATS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KENYON, NICHOLAS J., LYLES, COURTNEY REES · 2016 to 2025
$47.3M
UC Davis Environmental Health Sciences Core CenterP30ES023513 · NIEHS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Ameer Taha · 2015 to 2026
$26.0M
Revisiting ReCHARGE: ECHO Follow up on Middle Childhood and AdolescenceUG3OD023365 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BENNETT, DEBORAH HALL, HERTZ-PICCIOTTO, IRVA · 2016 to 2024
$6.4M
"Corral and Kill" strategy for HIV eradication using MSC in an SIV modelR37AI153025 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Satya Dandekar · 2020 to 2026
$5.3M
Early HIV Effects on Gut Immunity and Inflammation for Seeding Viral ReservoirsR01AI123105 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI DANDEKAR, SATYA · 2016 to 2020
$3.8M
Portable GC detector for breath-based COVID diagnosticsU18TR003795 · NCATS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI DAVIS, CRISTINA ELIZABETH, KENYON, NICHOLAS J. · 2021 to 2022
$1.9M
BLRD VA I01 BX004965NCATS NIH HHS U18 TR003795NCATS NIH HHS UL1 TR001860NIAID NIH HHS R01 AI123105NIAID NIH HHS R37 AI153025NIEHS NIH HHS P30 ES023513NIH HHS UG3 OD023365
6 · The paper itself

Abstract

Exhaled breath condensate (EBC) is routinely collected and analyzed in breath research. Because it contains aerosol droplets, EBC samples from SARS-CoV-2 infected individuals harbor the virus and pose the threat of infectious exposure. We report for the first time a safe and consistent method to fully inactivate SARS-CoV-2 in EBC samples and make EBC samples safe for processing and analysis. EBC samples containing infectious SARS-CoV-2 were treated with several concentrations of acetonitrile. The most commonly used 10% acetonitrile treatment for EBC processing failed to completely inactivate the virus in samples and viable virus was detected by the assay of SARS-CoV-2 infection of Vero E6 cells in a biosafety level 3 laboratory. Treatment with either 50% or 90% acetonitrile was effective to completely inactivate the virus, resulting in safe, non-infectious EBC samples that can be used for metabolomic analysis. Our study provides SARS-CoV-2 inactivation protocol for the collection and processing of EBC samples in the clinical setting and for advancing to metabolic assessments in health and disease.

Indexed as

COVID-19SARS-CoV-2Breath TestsExhalationHumansMetabolomicsCOVID-19exhaled breath condensate (EBC)infectious materialmetabolomics analysisSARS-CoV-2

Identifiers

PMID34852327
PMCPMC9809239

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.