Evidence map›Paper›PMID 34851991›Full record

ArticlePloS one2021

Identification and verification of seed development related miRNAs in kernel almond by small RNA sequencing and qPCR.

Marjan Jafari, Behrouz Shiran, Gholamreza Rabiei, Roudabeh Ravash, Badraldin Ebrahim Sayed Tabatabaei, Pedro Martínez-Gómez

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Marjan JafariDepartment of Horticulture, Faculty of Agriculture, Shahrekord University, Shahrekord, Iran.
Behrouz ShiranDepartment of Plant Breeding and Biotechnology, Faculty of Agriculture, Shahrekord University, Shahrekord, Iran.ORCID 0000-0001-9997-4718
Gholamreza RabieiDepartment of Horticulture, Faculty of Agriculture, Shahrekord University, Shahrekord, Iran.
Roudabeh RavashDepartment of Plant Breeding and Biotechnology, Faculty of Agriculture, Shahrekord University, Shahrekord, Iran.
Badraldin Ebrahim Sayed TabatabaeiDepartment of Biotechnology, College of Agriculture, Isfahan University of Technology, Isfahan, Iran.
Pedro Martínez-GómezDepartment of Plant Breeding, CEBAS-CSIC, Murcia, Spain.ORCID 0000-0003-1054-8814
Shahrekord University · IRCentro de Edafología y Biología Aplicada del Segura · ESIsfahan University of Technology · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many studies have investigated the role of miRNAs on the yield of various plants, but so far, no report is available on the identification and role of miRNAs in fruit and seed development of almonds. In this study, preliminary analysis by high-throughput sequencing of short RNAs of kernels from the crosses between almond cultivars 'Sefid' × 'Mamaee' (with small and large kernels, respectively) and 'Sefid' × 'P. orientalis' (with small kernels) showed that the expressions of several miRNAs such as Pdu-miR395a-3p, Pdu-miR8123-5p, Pdu-miR482f, Pdu-miR6285, and Pdu-miR396a were significantly different. These miRNAs targeted genes encoding different proteins such as NYFB-3, SPX1, PGSIP3 (GUX2), GH3.9, and BEN1. The result of RT-qPCR revealed that the expression of these genes showed significant differences between the crosses and developmental stages of the seeds, suggesting that these genes might be involved in controlling kernel size because the presence of these miRNAs had a negative effect on their target genes. Pollen source can influence kernel size by affecting hormonal signaling and metabolic pathways through related miRNAs, a phenomenon known as xenia.

Indexed as

Gene Expression Regulation, PlantHigh-Throughput Nucleotide SequencingMicroRNAsMutant ProteinsMutationPrunus dulcisReal-Time Polymerase Chain ReactionRNA, PlantSequence Analysis, RNAMicroRNAsMutant ProteinsRNA, Plant

Identifiers

PMID34851991
PMCPMC8635354
OpenAlexW3216931879

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.