Evidence map›Paper›PMID 34851660›Full record

ArticleScience advances2021

De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex.

Kai-En Chen, Qian Guo, Timothy A Hill, Yi Cui, Amy K Kendall, Zhe Yang, Ryan J Hall, Michael D Healy, Joanna Sacharz, Suzanne J Norwood and 13 more

Abstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Dystonia-predominant VPS35-related parkinson's disease: diagnostic challenges and the role of Levodopa response in unmasking genetic etiology.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2025
    Article
  3. Article
  4. Identification of a VPS29 isoform with restricted association to Retriever and Retromer accessory proteins through autoinhibition.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. De novo discovery of a molecular glue-like macrocyclic peptide that induces MCL1 homodimerization.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Review
  8. Review
  9. Review
  10. Structural basis for coupling of the WASH subunit FAM21 with the endosomal SNX27-Retromer complex.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Receptor Recycling by Retromer.Molecular and cellular biology · 2023
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Kai-En ChenInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.ORCID 0000-0003-1106-1629
Qian GuoInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.ORCID 0000-0002-2133-5358
Timothy A HillInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.ORCID 0000-0001-9727-9930
Yi CuiSchool of Biomedical Sciences, The University of Queensland, St Lucia, Queensland 4072, Australia.
Amy K KendallDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA.ORCID 0000-0002-6176-9177
Zhe YangSchool of Biomedical Sciences, The University of Queensland, St Lucia, Queensland 4072, Australia.ORCID 0000-0002-7987-0855
Ryan J HallInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.ORCID 0000-0002-8543-0370
Michael D HealyInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.ORCID 0000-0003-2924-9179
Joanna SacharzDepartment of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3052, Australia.
Suzanne J NorwoodInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.
Sachini FonsekaInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.ORCID 0000-0002-0940-2511
Boyang XieDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA.ORCID 0000-0003-2829-9254
Robert C ReidInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.ORCID 0000-0002-0829-239X
Natalya LenevaInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.ORCID 0000-0001-8102-9769
Robert G PartonInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.ORCID 0000-0002-7494-5248
Rajesh GhaiInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.
David A StroudDepartment of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3052, Australia.ORCID 0000-0002-2048-3383
David P FairlieInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.ORCID 0000-0002-7856-8566
Hiroaki SugaDepartment of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-Ku, Tokyo 113-0033, Japan.
Lauren P JacksonDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37232, USA.ORCID 0000-0002-3705-6126
Rohan D TeasdaleSchool of Biomedical Sciences, The University of Queensland, St Lucia, Queensland 4072, Australia.ORCID 0000-0001-7455-5269
Toby PassiouraDepartment of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-Ku, Tokyo 113-0033, Japan.ORCID 0000-0002-6089-5067
Brett M CollinsInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia.ORCID 0000-0002-6070-3774

Funding

NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
The molecular role of tepsin in membrane trafficking pathwaysR35GM119525 · NIGMS · VANDERBILT UNIVERSITY · PI Lauren Parker Jackson · 2016 to 2026
$4.3M
NIGMS NIH HHS R35 GM119525NIGMS NIH HHS U24 GM129539
6 · The paper itself

Abstract

The retromer complex (Vps35-Vps26-Vps29) is essential for endosomal membrane trafficking and signaling. Mutation of the retromer subunit Vps35 causes late-onset Parkinson’s disease, while viral and bacterial pathogens can hijack the complex during cellular infection. To modulate and probe its function, we have created a novel series of macrocyclic peptides that bind retromer with high affinity and specificity. Crystal structures show that most of the cyclic peptides bind to Vps29 via a Pro-Leu–containing sequence, structurally mimicking known interactors such as TBC1D5 and blocking their interaction with retromer in vitro and in cells. By contrast, macrocyclic peptide RT-L4 binds retromer at the Vps35-Vps26 interface and is a more effective molecular chaperone than reported small molecules, suggesting a new therapeutic avenue for targeting retromer. Last, tagged peptides can be used to probe the cellular localization of retromer and its functional interactions in cells, providing novel tools for studying retromer function.

Identifiers

PMID34851660
PMCPMC8635440

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.