Evidence map›Paper›PMID 34851655›Full record

ArticleJournal of virology2022

Hepatitis B Virus X Protein Expression Is Tightly Regulated by N6-Methyladenosine Modification of Its mRNA.

Geon-Woo Kim, Aleem Siddiqui

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  7. Unveiling the dynamics and therapeutic potential of mInternational journal of biological sciences · 2025
    Review
  8. International journal of biological sciences · 2025
    Article
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  13. Recent insights into NCurrent opinion in genetics & development · 2024
    Review
  14. Article
  15. Article
  16. [Post-transcriptional regulation mechanism and antiviral strategy of hepatitis B virus RNA].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2024
    Review
  17. Review
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  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Geon-Woo KimDivision of Infectious Diseases and Public Global Health, University of California, San Diegogrid.266100.3, La Jolla, California, USA.ORCID 0000-0003-0432-8268
Aleem SiddiquiDivision of Infectious Diseases and Public Global Health, University of California, San Diegogrid.266100.3, La Jolla, California, USA.ORCID 0000-0001-5970-7535
University of California San Diego · US

Funding

Mechanisms of HBV-Induced Innate ImmunityR01AI125350 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SIDDIQUI, ALEEM · 2017 to 2021
$1.9M
Epitranscriptomic regulation of HBV gene expressionR01AI139234 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SIDDIQUI, ALEEM · 2019 to 2023
$1.8M
Epitranscriptomic regulation of HBV gene expressionR56AI139234 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SIDDIQUI, ALEEM · 2018 to 2018
$393k
NIAID NIH HHS R01 AI125350NIAID NIH HHS R01 AI139234NIAID NIH HHS R56 AI139234
6 · The paper itself

Abstract

Hepatitis B virus (HBV) encodes a regulatory protein, termed HBx, that has been intensely studied in the past and shown to play a key role(s) in viral transcription and replication. In addition, a huge body of work exists in the literature related to signal transduction and possible mechanism(s) leading to hepatocarcinogenesis associated with infection. We have previously reported that HBV transcripts are modified by N6-methyladenosine (m6A) at the single consensus DRACH motif at nucleotides (nt) 1905 to 1909 in the epsilon structural element, and this m6A modification affects the HBV life cycle. In this study, we present evidence that additional variants of m6A (DRACH) motifs located within nt 1606 to 1809 correspond to the coding region of HBx mRNA and 3' untranslated region (UTR) of other viral mRNAs. Using the mutants of additional m6A sites in nt 1606 to 1809 and a depletion strategy of m6A methyltransferases (METTL3/14) and reader proteins (YTHDFs), we show that m6A modification at nt 1616, located in the HBx coding region, regulates HBx protein expression. The HBx RNA and protein expression levels were notably increased by the silencing of m6A reader YTHDF2 and methyltransferases as well as the mutation of m6A sites in the HBx coding region. However, other viral protein expression levels were not affected by the m6A modification at nt 1616. Thus, m6A modifications in the HBx open reading frame (ORF) downregulate HBx protein expression, commonly seen during HBV transfections, transgenic mice, and natural infections of human hepatocytes. These studies identify the functional role of m6A modification in the subtle regulation of HBx protein expression consistent with its possible role in establishing chronic hepatitis.

Indexed as

Gene Expression Regulation, ViralAdenosineGenome, ViralHepatitis B virusHepatocytesHumansMethyltransferasesMutationNucleotide MotifsOpen Reading FramesRNA-Binding ProteinsRNA, MessengerRNA, ViralTrans-ActivatorsViral Regulatory and Accessory ProteinsAdenosinehepatitis B virus X proteinMethyltransferasesN-methyladenosineRNA-Binding ProteinsRNA, MessengerRNA, ViralTrans-ActivatorsViral Regulatory and Accessory ProteinsYTHDF2 protein, humanHBV life cycleHBx proteinhepatitis B virusN6-methyladenosine

Identifiers

PMID34851655
PMCPMC8865537
OpenAlexW3214812624

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.