Evidence map›Paper›PMID 34851166›Full record

ArticlemSphere2021

Metabolites with SARS-CoV-2 Inhibitory Activity Identified from Human Microbiome Commensals.

Frank J Piscotta, Hans-Heinrich Hoffmann, Young Joo Choi, Gabriel I Small, Alison W Ashbrook, Bimal Koirala, Elizabeth A Campbell, Seth A Darst, Charles M Rice, Sean F Brady

Open access · goldAbstract read
In one paragraph

Article in mSphere, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
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  5. Review
  6. Journal of virology · 2023
    Article
  7. Review
  8. Review
  9. Microbiota medicine: towards clinical revolution.Journal of translational medicine · 2022
    Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Frank J PiscottaLaboratory of Genetically Encoded Small Molecules, The Rockefeller Universitygrid.134907.8, New York, New York, USA.
Hans-Heinrich HoffmannLaboratory of Virology and Infectious Disease, The Rockefeller Universitygrid.134907.8, New York, New York, USA.
Young Joo ChoiLaboratory of Molecular Biophysics, The Rockefeller Universitygrid.134907.8, New York, New York, USA.ORCID 0000-0001-9902-2979
Gabriel I SmallLaboratory of Molecular Biophysics, The Rockefeller Universitygrid.134907.8, New York, New York, USA.
Alison W AshbrookLaboratory of Virology and Infectious Disease, The Rockefeller Universitygrid.134907.8, New York, New York, USA.
Bimal KoiralaLaboratory of Genetically Encoded Small Molecules, The Rockefeller Universitygrid.134907.8, New York, New York, USA.
Elizabeth A CampbellLaboratory of Molecular Biophysics, The Rockefeller Universitygrid.134907.8, New York, New York, USA.
Seth A DarstLaboratory of Molecular Biophysics, The Rockefeller Universitygrid.134907.8, New York, New York, USA.
Charles M RiceLaboratory of Virology and Infectious Disease, The Rockefeller Universitygrid.134907.8, New York, New York, USA.
Sean F BradyLaboratory of Genetically Encoded Small Molecules, The Rockefeller Universitygrid.134907.8, New York, New York, USA.
Rockefeller University · US

Funding

Structure, function, and regulation of the bacterial transcription cycleR35GM118130 · NIGMS · ROCKEFELLER UNIVERSITY · PI DARST, SETH A. · 2016 to 2025
$8.9M
Genetics and Cell BiologyT32GM066699 · NIGMS · ROCKEFELLER UNIVERSITY · PI STRICKLAND, SIDNEY · 2004 to 2021
$7.6M
Structure, function, and inhibition of the SARS-CoV-2 replication-transcription complexR01AI161278 · NIAID · ROCKEFELLER UNIVERSITY · PI Seth A. Darst · 2021 to 2026
$3.9M
Structure/function analyses of essential mycobacterial transcription regulatorsR01GM114450 · NIGMS · ROCKEFELLER UNIVERSITY · PI CAMPBELL, ELIZABETH A · 2015 to 2023
$3.4M
Discovery of GPCR-active natural products and their biosynthetic genes from the human associated bacteriaR01AT009562 · NCCIH · ROCKEFELLER UNIVERSITY · PI BRADY, SEAN F · 2017 to 2021
$2.2M
NCCIH NIH HHS R01 AT009562NIAID NIH HHS R01 AI161278NIGMS NIH HHS R01 GM114450NIGMS NIH HHS R35 GM118130NIGMS NIH HHS T32 GM066699
6 · The paper itself

Abstract

The COVID-19 pandemic has highlighted the need to identify additional antiviral small molecules to complement existing therapies. Although increasing evidence suggests that metabolites produced by the human microbiome have diverse biological activities, their antiviral properties remain poorly explored. Using a cell-based SARS-CoV-2 infection assay, we screened culture broth extracts from a collection of phylogenetically diverse human-associated bacteria for the production of small molecules with antiviral activity. Bioassay-guided fractionation uncovered three bacterial metabolites capable of inhibiting SARS-CoV-2 infection. This included the nucleoside analogue N

Indexed as

Metabolic Networks and PathwaysAntiviral AgentsBacteriaBiological AssayCell Line, TumorCulture MediaHumansMicrobiotaMolecular Docking SimulationProtease InhibitorsProtein BindingSARS-CoV-2SymbiosisAntiviral AgentsCulture MediaProtease Inhibitorsbiochemistrymolecular biologyvirology

Identifiers

PMID34851166
PMCPMC8636105
OpenAlexW3216345273

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.