Evidence map›Paper›PMID 34851164›Full record

ArticlemSphere2021

Discovery of an Antarctic Ascidian-Associated Uncultivated

Alison E Murray, Chien-Chi Lo, Hajnalka E Daligault, Nicole E Avalon, Robert W Read, Karen W Davenport, Mary L Higham, Yuliya Kunde, Armand E K Dichosa, Bill J Baker and 1 more

Abstract read
In one paragraph

Article in mSphere, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. iScience · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alison E MurrayDivision of Earth and Ecosystem Science, Desert Research Institute, Reno, Nevada, USA.ORCID 0000-0001-5790-7584
Chien-Chi LoBioscience Division, Los Alamos National Laboratorygrid.148313.c, Los Alamos, New Mexico, USA.ORCID 0000-0003-3470-1078
Hajnalka E DaligaultBioscience Division, Los Alamos National Laboratorygrid.148313.c, Los Alamos, New Mexico, USA.ORCID 0000-0001-5937-9869
Nicole E AvalonDepartment of Chemistry, University of South Florida, Tampa, Florida, USA.ORCID 0000-0003-3588-892X
Robert W ReadDivision of Earth and Ecosystem Science, Desert Research Institute, Reno, Nevada, USA.ORCID 0000-0002-6967-5634
Karen W DavenportBioscience Division, Los Alamos National Laboratorygrid.148313.c, Los Alamos, New Mexico, USA.ORCID 0000-0002-2740-1344
Mary L HighamDivision of Earth and Ecosystem Science, Desert Research Institute, Reno, Nevada, USA.ORCID 0000-0001-8313-2137
Yuliya KundeBioscience Division, Los Alamos National Laboratorygrid.148313.c, Los Alamos, New Mexico, USA.ORCID 0000-0003-3252-141X
Armand E K DichosaBioscience Division, Los Alamos National Laboratorygrid.148313.c, Los Alamos, New Mexico, USA.ORCID 0000-0003-0640-6629
Bill J BakerDepartment of Chemistry, University of South Florida, Tampa, Florida, USA.ORCID 0000-0003-3033-5779
Patrick S G ChainBioscience Division, Los Alamos National Laboratorygrid.148313.c, Los Alamos, New Mexico, USA.ORCID 0000-0003-3949-3634

Funding

Deciphering the metagenome-encoded pathway and domain structure for Palmerolide biosynthesisR21CA205932 · NCI · DESERT RESEARCH INSTITUTE · PI BAKER, BILL J, CHAIN, PATRICK S. G. · 2018 to 2019
$427k
NCI NIH HHS R21 CA205932
6 · The paper itself

Abstract

The Antarctic marine ecosystem harbors a wealth of biological and chemical innovation that has risen in concert over millennia since the isolation of the continent and formation of the Antarctic circumpolar current. Scientific inquiry into the novelty of marine natural products produced by Antarctic benthic invertebrates led to the discovery of a bioactive macrolide, palmerolide A, that has specific activity against melanoma and holds considerable promise as an anticancer therapeutic. While this compound was isolated from the Antarctic ascidian Synoicum adareanum, its biosynthesis has since been hypothesized to be microbially mediated, given structural similarities to microbially produced hybrid nonribosomal peptide-polyketide macrolides. Here, we describe a metagenome-enabled investigation aimed at identifying the biosynthetic gene cluster (BGC) and palmerolide A-producing organism. A 74-kbp candidate BGC encoding the multimodular enzymatic machinery (hybrid type I-

Indexed as

MicrobiotaAnimalsAntarctic RegionsMacrolidesMultigene FamilyPhylogenyRNA, Ribosomal, 16SUrochordataVerrucomicrobiaMacrolidesRNA, Ribosomal, 16SAntarcticanticancerascidian natural productbiosynthetic gene clustermicrobiome metagenomepalmerolidesecondary metaboliteSynoicihabitans palmerolidicusSynoicum adareanumVerrucomicrobia

Identifiers

PMID34851164
PMCPMC8636102

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.