Evidence map›Paper›PMID 34851014›Full record

ArticleAngewandte Chemie (International ed. in English)2022

Fluorescence Imaging of Mitochondrial DNA Base Excision Repair Reveals Dynamics of Oxidative Stress Responses.

Yong Woong Jun, Eddy Albarran, David L Wilson, Jun Ding, Eric T Kool

Open access · greenAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. A Fluorogenic Hydrazino-Pictet-Spengler Reaction in Live Cells.Angewandte Chemie (International ed. in English) · 2025
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Chemical Tools for the Study of DNA Repair.Accounts of chemical research · 2022
    Article
  15. Article
  16. Miniaturized Chemical Tags for Optical Imaging.Angewandte Chemie (International ed. in English) · 2022
    Review
  17. Article
  18. Dynamic features of human mitochondrial DNA maintenance and transcription.Frontiers in cell and developmental biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yong Woong JunDepartment of Chemistry, ChEM-H Institute, and Stanford Cancer Institute, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0001-9359-1265
Eddy AlbarranDepartment of Neurosurgery, Department of Neurology and Neurological Sciences, and Wu Tsai Neuroscience institute, Stanford University School of Medicine, Stanford, CA, 94305, USA.
David L WilsonDepartment of Chemistry, ChEM-H Institute, and Stanford Cancer Institute, Stanford University, Stanford, CA, 94305, USA.
Jun DingDepartment of Neurosurgery, Department of Neurology and Neurological Sciences, and Wu Tsai Neuroscience institute, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Eric T KoolDepartment of Chemistry, ChEM-H Institute, and Stanford Cancer Institute, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0002-7310-2935
Cardiovascular Institute of the South · USNeurosciences Institute · US

Funding

Measuring and Modulating Oxidative DNA Damage Surveillance PathwaysR01CA217809 · NCI · STANFORD UNIVERSITY · PI KOOL, ERIC T. · 2017 to 2024
$3.7M
Functional organization of neural circuits underlying movement controlR00NS075136 · NINDS · STANFORD UNIVERSITY · PI DING, JUN · 2012 to 2014
$727k
Functional organization of neural circuits underlying movement controlK99NS075136 · NINDS · HARVARD MEDICAL SCHOOL · PI DING, JUN · 2011 to 2011
$85k
Howard Hughes Medical InstituteNCI NIH HHS R01 CA217809NINDS NIH HHS K99 NS075136NINDS NIH HHS NS075136NINDS NIH HHS R00 NS075136
6 · The paper itself

Abstract

Mitochondrial function in cells declines with aging and with neurodegeneration, due in large part to accumulated mutations in mitochondrial DNA (mtDNA) that arise from deficient DNA repair. However, measuring this repair activity is challenging. We employ a molecular approach for visualizing mitochondrial base excision repair (BER) activity in situ by use of a fluorescent probe (UBER) that reacts rapidly with AP sites resulting from BER activity. Administering the probe to cultured cells revealed signals that were localized to mitochondria, enabling selective observation of mtDNA BER intermediates. The probe showed elevated DNA repair activity under oxidative stress, and responded to suppression of glycosylase activity. Furthermore, the probe illuminated the time lag between the initiation of oxidative stress and the initial step of BER. Absence of MTH1 in cells resulted in elevated demand for BER activity upon extended oxidative stress, while the absence of OGG1 activity limited glycosylation capacity.

Indexed as

Optical ImagingAnimalsCells, CulturedDNA, MitochondrialDNA RepairFluorescent DyesHeLa CellsHumansMiceOxidative StressDNA, MitochondrialFluorescent DyesAP sitesbase excision repairDNA damagefluorescence probesmitochondrial DNA

Identifiers

PMID34851014
PMCPMC8792287
OpenAlexW3217666405

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.