Evidence map›Paper›PMID 34850882›Full record

ArticleJournal of experimental botany2022

Plant circadian clock control of Medicago truncatula nodulation via regulation of nodule cysteine-rich peptides.

Mingkee Achom, Proyash Roy, Beatriz Lagunas, Emma Picot, Luke Richards, Roxanna Bonyadi-Pour, Alonso J Pardal, Laura Baxter, Bethany L Richmond, Nadine Aschauer and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Role of theHorticulture research · 2026
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  11. GmTOC1b inhibits nodulation by repressingFrontiers in plant science · 2022
    Article
  12. Time Series Transcriptome Analysis inFrontiers in plant science · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 3 countries.

Mingkee AchomSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.ORCID 0000-0002-7908-3368
Proyash RoySchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.ORCID 0000-0002-8053-5691
Beatriz LagunasSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.ORCID 0000-0003-2372-7520
Emma PicotSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.ORCID 0000-0003-2525-8828
Luke RichardsSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.
Roxanna Bonyadi-PourSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.
Alonso J PardalWarwick Medical School, University of Warwick, Coventry CV4 7AL, UK.
Laura BaxterSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.ORCID 0000-0003-3287-7547
Bethany L RichmondSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.ORCID 0000-0001-5279-4269
Nadine AschauerSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.
Eleanor M FletcherSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.
Monique RowsonSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.
Joseph BlackwellSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.ORCID 0000-0002-3875-1948
Charlotte Rich-GriffinSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.ORCID 0000-0001-8212-9542
Kirankumar S MysoreInstitute for Agricultural Biosciences, Oklahoma State University, Ardmore, OK 73401, USA.
Jiangqi WenInstitute for Agricultural Biosciences, Oklahoma State University, Ardmore, OK 73401, USA.
Sascha OttWarwick Medical School, University of Warwick, Coventry CV4 7AL, UK.ORCID 0000-0002-5411-8114
Isabelle A CarréSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.
Miriam L GiffordSchool of Life Sciences, Gibbet Hill Road, University of Warwick, Coventry CV4 7AL, UK.ORCID 0000-0002-4005-2513
University of Warwick · GBOklahoma State University Institute of Technology · USCentre for Human Genetics · GBUniversity of Bristol · GBUniversity of Dhaka · BD

Funding

Bioinformatics Research Technology PlatformBiotechnology and Biological Sciences Research Council BB/P002145/1Biotechnology and Biological Sciences Research Council BB/T015357/1Centre National De La Recherche ScientifiqueInternational Commonwealth CommissionMidlands Integrative Bioscience Training PartnershipNational Science Foundation DBI-0703285Noble Research InstituteWarwick Chancellor's International Scholarship Scheme
6 · The paper itself

Abstract

Legumes house nitrogen-fixing endosymbiotic rhizobia in specialized polyploid cells within root nodules, which undergo tightly regulated metabolic activity. By carrying out expression analysis of transcripts over time in Medicago truncatula nodules, we found that the circadian clock enables coordinated control of metabolic and regulatory processes linked to nitrogen fixation. This involves the circadian clock-associated transcription factor LATE ELONGATED HYPOCOTYL (LHY), with lhy mutants being affected in nodulation. Rhythmic transcripts in root nodules include a subset of nodule-specific cysteine-rich peptides (NCRs) that have the LHY-bound conserved evening element in their promoters. Until now, studies have suggested that NCRs act to regulate bacteroid differentiation and keep the rhizobial population in check. However, these conclusions came from the study of a few members of this very large gene family that has complex diversified spatio-temporal expression. We suggest that rhythmic expression of NCRs may be important for temporal coordination of bacterial activity with the rhythms of the plant host, in order to ensure optimal symbiosis.

Indexed as

Circadian ClocksMedicago truncatulaSinorhizobium melilotiCysteineGene Expression Regulation, PlantNitrogen FixationPeptidesPlant ProteinsPlant Root NodulationRoot Nodules, PlantSymbiosisCysteinePeptidesPlant ProteinsCircadian biologyMedicago truncatulanitrogen fixationnodulationplant–environment interactionsymbiosis

Identifiers

PMID34850882
PMCPMC8982390
OpenAlexW3215148544

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.