Evidence map›Paper›PMID 34850820›Full record

ReviewBriefings in bioinformatics2022

Managing the life cycle of a portfolio of open data resources at the SIB Swiss Institute of Bioinformatics.

Chiara Gabella, Severine Duvaud, Christine Durinx

Abstract readReview
In one paragraph

Review in Briefings in bioinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Chiara GabellaSeverine DuvaudSIB Swiss Institute of Bioinformatics, Quartier Sorge - Bâtiment Amphipôle, CH-1015 Lausanne, Switzerland.ORCID 0000-0002-7104-5025
Severine DuvaudSeverine DuvaudSIB Swiss Institute of Bioinformatics, Quartier Sorge - Bâtiment Amphipôle, CH-1015 Lausanne, Switzerland.ORCID 0000-0001-7892-9678
Christine DurinxSeverine DuvaudSIB Swiss Institute of Bioinformatics, Quartier Sorge - Bâtiment Amphipôle, CH-1015 Lausanne, Switzerland.ORCID 0000-0003-4237-8899

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Data resources are essential for the long-term preservation of scientific data and the reproducibility of science. The SIB Swiss Institute of Bioinformatics provides the life science community with a portfolio of openly accessible, high-quality databases and software platforms, which vary from expert-curated knowledgebases, such as UniProtKB/Swiss-Prot (part of the UniProt consortium) and STRING, to online platforms such as SWISS-MODEL and SwissDrugDesign. SIB's mission is to ensure that these resources are available in the long term, as long as their return on investment and their scientific impact are high. To this end, SIB provides its resources, in addition to stable financial support, with a range of high-quality, innovative services that are, to our knowledge, unique in the field. Through this first-class management framework with central services, such as user-centric consulting activities, legal support, open-science guidance, knowledge sharing and training efforts, SIB supports the promotion of excellence in resource development and operation. This review presents the ecosystem of data resources at SIB; the process used for the identification, evaluation and development of resources; and the support activities that SIB provides. A set of indicators has been put in place to select the resources and establish quality standards, reflecting their multifaceted nature and complexity. Through this paper, the reader will discover how SIB's leading tools and databases are fostered by the institute, leading them to be best-in-class resources able to tackle the burning matters that society faces from disease outbreaks and cancer to biodiversity and open science.

Indexed as

Computational BiologyEcosystemAnimalsDatabases, ProteinLife Cycle StagesReproducibility of Resultsbest-in-class resourcesbioinformaticsopen scienceresearch infrastructuresustainabilityUser Experience (UX)

Identifiers

PMID34850820
PMCPMC8769900

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.