Evidence map›Paper›PMID 34849887›Full record

ArticleGenetics2021

CLAMP regulates zygotic genome activation in Drosophila embryos.

Megan M Colonnetta, Juan E Abrahante, Paul Schedl, Daryl M Gohl, Girish Deshpande

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Breaking anterior-posterior symmetry in the moth flybioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Review
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  6. Review
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  8. Article
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  10. Article
  11. Mechanisms of Interaction between Enhancers and Promoters in ThreeInternational journal of molecular sciences · 2023
    Review
  12. Article
  13. Dimerization Activity of a Disordered N-Terminal Domain fromInternational journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Megan M ColonnettaDepartment of Molecular Biology, Princeton University, Princeton, NJ 08540, USA.
Juan E AbrahanteUniversity of Minnesota Informatics Institute, Minneapolis, MN 55455, USA.
Paul SchedlDepartment of Molecular Biology, Princeton University, Princeton, NJ 08540, USA.
Daryl M GohlUniversity of Minnesota Genomics Center, Minneapolis, MN 55455, USA.
Girish DeshpandeDepartment of Molecular Biology, Princeton University, Princeton, NJ 08540, USA.
Princeton University · USUniversity of Minnesota · US

Funding

Genetic regulatory mechanism in development and differentiationR35GM126975 · NIGMS · PRINCETON UNIVERSITY · PI SCHEDL, PAUL D · 2018 to 2022
$3.0M
Involvement of calcium channels in directed germ cell migrationR21HD093913 · NICHD · PRINCETON UNIVERSITY · PI SCHEDL, PAUL D · 2018 to 2019
$446k
NICHD NIH HHS R21 HD093913NIGMS NIH HHS R35 GM126975
6 · The paper itself

Abstract

Embryonic patterning is critically dependent on zygotic genome activation (ZGA). In Drosophila melanogaster embryos, the pioneer factor Zelda directs ZGA, possibly in conjunction with other factors. Here, we have explored the novel involvement of Chromatin-Linked Adapter for MSL Proteins (CLAMP) during ZGA. CLAMP binds thousands of sites genome-wide throughout early embryogenesis. Interestingly, CLAMP relocates to target promoter sequences across the genome when ZGA is initiated. Although there is a considerable overlap between CLAMP and Zelda binding sites, the proteins display distinct temporal dynamics. To assess whether CLAMP occupancy affects gene expression, we analyzed transcriptomes of embryos zygotically compromised for either clamp or zelda and found that transcript levels of many zygotically activated genes are similarly affected. Importantly, compromising either clamp or zelda disrupted the expression of critical segmentation and sex determination genes bound by CLAMP (and Zelda). Furthermore, clamp knockdown embryos recapitulate other phenotypes observed in Zelda-depleted embryos, including nuclear division defects, centrosome aberrations, and a disorganized actomyosin network. Based on these data, we propose that CLAMP acts in concert with Zelda to regulate early zygotic transcription.

Indexed as

AnimalsBinding SitesDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsGene Expression Regulation, DevelopmentalNuclear ProteinsProtein BindingZygoteCLAMP protein, DrosophilaDNA-Binding ProteinsDrosophila ProteinsNuclear Proteinszld protein, DrosophilaCLAMPembryonic developmentZeldazygotic genome activation (or ZGA)

Identifiers

PMID34849887
PMCPMC8633140
OpenAlexW3188289541

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.