Evidence map›Paper›PMID 34849874›Full record

ArticleGenetics2021

Regulation of Msh4-Msh5 association with meiotic chromosomes in budding yeast.

Krishnaprasad G Nandanan, Sagar Salim, Ajith V Pankajam, Miki Shinohara, Gen Lin, Parijat Chakraborty, Amamah Farnaz, Lars M Steinmetz, Akira Shinohara, Koodali T Nishant

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Krishnaprasad G NandananSchool of Biology, Indian Institute of Science Education and Research Thiruvananthapuram, Trivandrum 695016, India.
Sagar SalimSchool of Biology, Indian Institute of Science Education and Research Thiruvananthapuram, Trivandrum 695016, India.ORCID 0000-0003-3076-9358
Ajith V PankajamSchool of Biology, Indian Institute of Science Education and Research Thiruvananthapuram, Trivandrum 695016, India.
Miki ShinoharaGraduate School of Agriculture, Kindai University, Nara 631-8505, Japan.ORCID 0000-0002-7413-8235
Gen LinGenome Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Parijat ChakrabortySchool of Biology, Indian Institute of Science Education and Research Thiruvananthapuram, Trivandrum 695016, India.
Amamah FarnazSchool of Biology, Indian Institute of Science Education and Research Thiruvananthapuram, Trivandrum 695016, India.
Lars M SteinmetzGenome Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.ORCID 0000-0002-3962-2865
Akira ShinoharaInstitute for Protein Research, Osaka University, Osaka 565-0871, Japan.ORCID 0000-0003-4207-8247
Koodali T NishantSchool of Biology, Indian Institute of Science Education and Research Thiruvananthapuram, Trivandrum 695016, India.
Indian Institute of Science Education and Research Thiruvananthapuram · INEuropean Molecular Biology Laboratory · DEKindai University · JPProtein Research Foundation · JP

Funding

Wellcome Trust
6 · The paper itself

Abstract

In the baker's yeast Saccharomyces cerevisiae, most of the meiotic crossovers are generated through a pathway involving the highly conserved mismatch repair related Msh4-Msh5 complex. To understand the role of Msh4-Msh5 in meiotic crossing over, we determined its genome wide in vivo binding sites in meiotic cells. We show that Msh5 specifically associates with DSB hotspots, chromosome axes, and centromeres on chromosomes. A basal level of Msh5 association with these chromosomal features is observed even in the absence of DSB formation (spo11Δ mutant) at the early stages of meiosis. But efficient binding to DSB hotspots and chromosome axes requires DSB formation and resection and is enhanced by double Holliday junction structures. Msh5 binding is also correlated to DSB frequency and enhanced on small chromosomes with higher DSB and crossover density. The axis protein Red1 is required for Msh5 association with the chromosome axes and DSB hotspots but not centromeres. Although binding sites of Msh5 and other pro-crossover factors like Zip3 show extensive overlap, Msh5 associates with centromeres independent of Zip3. These results on Msh5 localization in wild type and meiotic mutants have implications for how Msh4-Msh5 works with other pro-crossover factors to ensure crossover formation.

Indexed as

MeiosisChromosomes, FungalCrossing Over, GeneticDNA-Binding ProteinsEndodeoxyribonucleasesMeiotic Recombination Protein SPO11Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDNA-Binding ProteinsEndodeoxyribonucleasesMeiotic Recombination Protein SPO11MSH4 protein, S cerevisiaeMSH5 protein, S cerevisiaeRED1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSpo11 protein, S cerevisiaechromosome axiscrossoverdouble strand breakmeiosisMsh5yeast

Identifiers

PMID34849874
PMCPMC8633088
OpenAlexW3182442916

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.