Evidence map›Paper›PMID 34849788›Full record

ArticleG3 (Bethesda, Md.)2021

Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae.

Peter Thorpe, Ramesh R Vetukuri, Pete E Hedley, Jenny Morris, Maximilian A Whisson, Lydia R J Welsh, Stephen C Whisson

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Frontiers in genetics · 2022
    Article
  6. Chromosome-level assembly of theFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Peter ThorpeSchool of Medicine, University of St Andrews, North Haugh, St Andrews KY16 9TF, UK.
Ramesh R VetukuriDepartment of Plant Breeding, Swedish University of Agricultural Sciences, Lomma, SE-234 22, Sweden.
Pete E HedleyCell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.
Jenny MorrisCell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.
Maximilian A WhissonIndependent, Dundee DD5 4QT, UK.
Lydia R J WelshCell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.
Stephen C WhissonCell and Molecular Sciences, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK.ORCID 0000-0001-9625-001X

Funding

Wellcome TrustWellcome Trust 105621/Z/14/Z
6 · The paper itself

Abstract

Species of Phytophthora, plant pathogenic eukaryotic microbes, can cause disease on many tree species. Genome sequencing of species from this genus has helped to determine components of their pathogenicity arsenal. Here, we sequenced genomes for two widely distributed species, Phytophthora pseudosyringae and Phytophthora boehmeriae, yielding genome assemblies of 49 and 40 Mb, respectively. We identified more than 270 candidate disease promoting RXLR effector coding genes for each species, and hundreds of genes encoding candidate plant cell wall degrading carbohydrate active enzymes (CAZymes). These data boost genome sequence representation across the Phytophthora genus, and form resources for further study of Phytophthora pathogenesis.

Indexed as

PhytophthoraGenomePlant DiseasesPlantsTreesVirulenceeffectoroomycetePhytophthoraRXLRtree pathogen

Identifiers

PMID34849788
PMCPMC8527500

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.