ArticleG3 (Bethesda, Md.)2022
De novo whole-genome assembly of Chrysanthemum makinoi, a key wild chrysanthemum.
Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 22 citations in OpenAlex.
- The origin and domestication of modern cultivated Chrysanthemum × morifolium.Nature plants · 2026Article
- Genome-wide identification of the CmPLATZ gene family and its role in cold acclimation and overwintering in Chrysanthemum morifolium.BMC plant biology · 2026Article
- QTL detection and candidate gene identification for prostrate growth habit in interspecific crosses of wild chrysanthemum (Horticulture research · 2025Article
- Biological and Medicinal Properties ofInternational journal of molecular sciences · 2025Review
- An annotated haplotype-resolved genome sequence assembly of diploid German chamomile, Matricaria chamomilla.Scientific data · 2025Article
- CGD: a multi-omics database forHorticulture research · 2024Article
- An improved genome assembly of Chrysanthemum nankingense reveals expansion and functional diversification of terpene synthase gene family.BMC genomics · 2024Article
- cla-miR164-Horticulture research · 2024Article
- Asteraceae genome database: a comprehensive platform for Asteraceae genomics.Frontiers in plant science · 2024Article
- Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum.Nature communications · 2023Article
- Genome-wide identification of the MIKCc-type MADS-box gene family inFrontiers in plant science · 2023Article
- Genome-Wide Characterization ofInternational journal of molecular sciences · 2022Article
- The complete sequence of the chloroplast genome ofMitochondrial DNA. Part B, Resources · 2022Article
- A genome-wide association and fine-mapping study of white rust resistance in hexaploid chrysanthemum cultivars with a wild diploid reference genome.Horticulture research · 2022Article
- The genusFrontiers in plant science · 2022Review
Corrections and comments
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Chrysanthemum is among the top 10 cut, potted, and perennial garden flowers in the world. Despite this, to date, only the genomes of two wild diploid chrysanthemums have been sequenced and assembled. Here, we present the most complete and contiguous chrysanthemum de novo assembly published so far, as well as a corresponding ab initio annotation. The cultivated hexaploid varieties are thought to originate from a hybrid of wild chrysanthemums, among which the diploid Chrysanthemum makinoi has been mentioned. Using a combination of Oxford Nanopore long reads, Pacific Biosciences long reads, Illumina short reads, Dovetail sequences, and a genetic map, we assembled 3.1 Gb of its sequence into nine pseudochromosomes, with an N50 of 330 Mb and a BUSCO complete score of 92.1%. Our ab initio annotation pipeline predicted 95,074 genes and marked 80.0% of the genome as repetitive. This genome assembly of C. makinoi provides an important step forward in understanding the chrysanthemum genome, evolution, and history.
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