ArticleiScience2021
CellexalVR: A virtual reality platform to visualize and analyze single-cell omics data.
Article in iScience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
- The virus lesson: Teaching viral structure and quasi-symmetry in mixed reality.Protein science : a publication of the Protein Society · 2026Article
- BestopCloud: an integrated one-stop solution for single-cell RNA sequencing data analysis.BMC genomics · 2025Article
- Single-cell omics: experimental workflow, data analyses and applications.Science China. Life sciences · 2025Review
- QuickVol: A lightweight browser tool for immersive visualizations of volumetric data.iScience · 2024Article
- An architecture for collaboration in systems biology at the age of the Metaverse.NPJ systems biology and applications · 2024Article
- Exocentric and Egocentric Views for Biomedical Data Analytics in Virtual Environments-A Usability Study.Journal of imaging · 2023Article
- Technologies for whole-cell modeling: Genome-wide reconstruction of a cell in silico.Development, growth & differentiation · 2023Review
- Digital Phenotyping: A Game Changer for the Broiler Industry.Animals : an open access journal from MDPI · 2023Review
- Developing virtual and augmented reality applications for science, technology, engineering and math education.BioTechniques · 2023Article
- Article
- StarmapVis: An interactive and narrative visualisation tool for single-cell and spatial data.Computational and structural biotechnology journal · 2023Article
- A Brave New World: Virtual Reality and Augmented Reality in Systems Biology.Frontiers in bioinformatics · 2022Article
- Spatially resolved transcriptomics in immersive environments.Visual computing for industry, biomedicine, and art · 2022Article
- Bioinformatics and the Metaverse: Are We Ready?Frontiers in bioinformatics · 2022Article
- A Novel Gesture-Based Control System for Fluorescence Volumetric Data in Virtual Reality.Sensors (Basel, Switzerland) · 2021Article
- singlecellVR: Interactive Visualization of Single-Cell Data in Virtual Reality.Frontiers in genetics · 2021Article
- Application of Open-Source Digital Resources for 3D Visualization of Clustered Transcriptomic Data.Physiologia plantarumArticle
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Single-cell RNAseq is a routinely used method to explore heterogeneity within cell populations. Data from these experiments are often visualized using dimension reduction methods such as UMAP and tSNE, where each cell is projected in two or three dimensional space. Three-dimensional projections can be more informative for larger and complex datasets because they are less prone to merging and flattening similar cell-types/clusters together. However, visualizing and cross-comparing 3D projections using current software on conventional flat-screen displays is far from optimal as they are still essentially 2D, and lack meaningful interaction between the user and the data. Here we present CellexalVR (www.cellexalvr.med.lu.se), a feature-rich, fully interactive virtual reality environment for the visualization and analysis of single-cell experiments that allows researchers to intuitively and collaboratively gain an understanding of their data.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.